genome.fa.s9514.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009514.1 Kokia drynarioides strain JFW-HI SEQ_124225, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  302545

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5124--5158	16	2.1	17	89	5	54	34	0	0	65	0.93
5984--6088	17	6.1	17	76	3	95	52	2	1	42	1.27
6033--6080	23	2.1	23	84	7	62	56	4	0	39	1.19
6543--6862	39	8.3	39	72	12	207	28	18	29	23	1.98
6637--6703	35	1.9	34	85	8	91	29	19	25	25	1.98
6565--6859	78	3.9	77	77	11	259	28	20	28	23	1.99
10835--10872	18	2.1	18	100	0	76	34	23	5	36	1.78
13195--13246	26	2.0	26	100	0	104	15	26	11	46	1.80
19039--19236	30	6.8	28	74	9	128	35	3	24	36	1.71
19040--19236	28	6.8	27	71	15	108	35	3	24	36	1.71
19006--19236	29	7.9	29	73	13	170	35	3	25	35	1.73
19037--19236	59	3.4	58	81	10	178	35	3	25	36	1.71
20189--20227	16	2.3	16	86	8	51	30	0	0	69	0.89
20447--20495	23	2.2	22	81	3	53	59	2	2	36	1.21
21047--21131	6	14.8	6	68	14	54	52	4	2	40	1.35
21049--21132	17	4.9	17	79	4	89	54	4	2	38	1.34
21048--21132	34	2.5	34	84	0	116	54	4	2	38	1.34
23789--23813	13	1.9	13	100	0	50	40	8	16	36	1.77
26585--26674	45	2.0	45	100	0	180	31	13	15	40	1.86
28293--28332	20	2.0	20	85	0	53	30	7	15	47	1.72
32339--32370	7	4.4	7	96	4	55	25	3	0	71	1.00
32484--32538	22	2.3	25	79	17	64	29	0	3	67	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38009--38108	48	2.1	48	92	0	164	38	20	19	23	1.94
38009--38131	48	2.6	48	86	2	149	39	19	18	22	1.93
39610--39658	24	2.2	21	82	10	53	61	10	6	22	1.50
41624--41657	2	17.0	2	100	0	68	50	50	0	0	1.00
41834--41880	21	2.2	21	85	14	62	38	23	14	23	1.92
42525--42610	35	2.5	35	96	0	154	26	25	11	36	1.90
42525--42622	35	2.8	34	90	3	133	26	24	13	35	1.92
49697--49782	35	2.5	35	88	0	127	29	23	10	37	1.88
49697--49794	35	2.8	35	81	6	117	28	22	12	36	1.90
56208--56256	24	2.0	24	84	8	62	48	0	6	44	1.27
57185--57235	21	2.5	22	73	23	56	21	5	1	70	1.18
67189--67303	18	6.4	18	78	11	112	26	20	20	33	1.97
67189--67302	36	3.2	36	80	9	135	26	21	19	33	1.97
67275--67317	18	2.4	18	80	0	50	30	20	25	23	1.99
74301--74396	18	5.3	18	85	5	140	17	23	26	32	1.97
74292--74410	36	3.3	36	88	5	177	21	23	25	30	1.99
81207--81255	18	2.7	18	90	0	71	22	22	22	32	1.98
81214--81293	18	4.4	19	90	4	105	17	18	28	35	1.94
81232--81299	18	3.8	18	94	3	111	17	17	32	32	1.94
86170--86275	49	2.2	49	81	3	124	17	4	35	41	1.71
86238--86312	36	2.1	36	82	5	89	14	5	40	40	1.69
86722--86767	22	2.1	22	87	0	65	50	10	8	30	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89571--89613	21	2.0	21	90	0	68	53	6	0	39	1.28
91282--91310	14	2.0	15	93	6	51	34	3	0	62	1.12
91736--91911	52	3.4	52	88	3	259	46	18	9	26	1.79
93673--93724	10	5.3	9	78	15	50	32	25	26	15	1.95
93673--93724	20	2.6	19	82	8	68	32	25	26	15	1.95
107955--108032	21	3.7	21	75	10	70	35	20	15	28	1.93
107966--108047	42	2.0	42	90	4	130	34	19	17	29	1.94
116800--116937	58	2.4	59	85	6	192	45	1	2	50	1.22
136024--136070	19	2.4	20	89	3	69	36	14	8	40	1.77
142899--142951	26	2.0	26	96	0	97	45	7	5	41	1.56
150661--150765	49	2.1	49	89	0	165	18	3	31	46	1.66
152789--152852	28	2.3	27	89	2	92	50	18	17	14	1.79
154821--154856	17	2.1	17	89	0	54	41	8	0	50	1.33
156440--156464	13	1.9	13	100	0	50	32	4	16	48	1.64
165217--165296	37	2.2	37	82	8	92	30	20	18	31	1.96
166266--166296	16	1.9	16	93	0	53	22	16	0	61	1.34
169589--169671	37	2.2	37	80	4	87	25	26	21	26	2.00
169706--169784	37	2.1	38	81	6	90	32	22	12	31	1.92
170600--170630	16	1.9	16	93	0	53	22	16	0	61	1.34
176551--176592	21	2.0	21	81	9	50	40	0	14	45	1.45
186397--186438	18	2.3	18	88	8	59	61	2	0	35	1.09
186507--186571	11	6.3	10	76	15	53	66	0	4	29	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187949--187994	24	1.9	24	86	8	67	60	4	6	28	1.40
189803--189835	18	1.9	17	88	11	50	60	0	0	39	0.97
190960--191002	8	5.9	8	79	20	58	23	11	0	65	1.25
190965--191002	20	1.9	20	100	0	76	21	13	0	65	1.26
190973--190998	12	2.2	12	100	0	52	15	15	0	69	1.20
203801--203905	33	3.2	33	77	5	106	31	10	11	46	1.74
203823--203904	32	2.5	32	80	2	92	32	8	12	46	1.72
212133--212161	13	2.1	14	93	6	51	13	6	3	75	1.13
217612--217793	91	2.0	91	100	0	364	45	13	18	23	1.84
218617--218655	12	3.4	11	82	10	51	79	0	5	15	0.90
218615--218654	17	2.4	17	87	8	55	77	0	5	17	0.94
219681--219722	12	3.5	12	81	9	50	76	0	9	14	1.02
220739--220769	14	2.1	15	94	5	55	77	3	6	12	1.08
234141--234184	23	1.9	23	90	0	70	40	36	2	20	1.65
246734--246845	55	2.0	55	100	0	224	40	12	24	23	1.89
247943--247992	19	2.8	17	82	11	64	14	8	12	66	1.45
248576--248614	12	3.3	12	89	10	55	79	0	20	0	0.73
258573--258597	6	4.2	6	100	0	50	36	16	32	16	1.90
259507--259544	14	2.6	15	83	8	51	57	7	15	18	1.62
267005--267101	37	2.6	37	82	6	115	30	22	13	32	1.93
270573--270606	5	6.6	5	90	6	50	85	0	14	0	0.60
271045--271116	37	1.9	37	91	5	119	31	29	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271137--271233	37	2.6	37	81	0	113	28	22	15	32	1.95
274509--274554	25	1.9	25	86	8	69	32	4	6	56	1.45
278632--278662	12	2.6	12	94	0	53	9	22	3	64	1.38
284366--284410	23	1.9	24	86	4	65	22	11	0	66	1.22
284355--284416	23	2.6	22	78	12	61	20	8	0	70	1.12
284926--285140	109	2.0	108	82	4	263	31	11	15	41	1.82
286095--286140	19	2.4	18	83	16	58	6	10	2	80	0.98
291338--291374	14	2.4	16	82	13	51	83	0	13	2	0.74
300088--300142	27	2.0	27	100	0	110	40	0	27	32	1.57

Tables:   1

The End!