Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009516.1 Kokia drynarioides strain JFW-HI SEQ_124227, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1978
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31


Found at i:1367 original size:72 final size:71

Alignment explanation


    Indices: 1268--1475  Score: 290
    Period size: 72  Copynumber: 2.9  Consensus size: 71

       1258 ATGCAATGGG

                                *                    *        *              
       1268 AACATCTAATAAATCTGCGAGAGCTTTCTCTCGGGAATTTTTCCAATTTAGCATCGCTTCCGGAG
          1 AACATCTAATAAATCTGC-AAAGCTTTCTCTCGGGAATTTTCCCAATTTAACATCGCTTCCGGAG

                   
       1333 GGGATTC
         65 GGGATTC

                          *                 *                                
       1340 AACATCTAATAAATTTGCAAAGCCTTTCTCTCTGGAATTTTCCCAATTTAACATCGCTTCCGGAG
          1 AACATCTAATAAATCTGCAAAG-CTTTCTCTCGGGAATTTTCCCAATTTAACATCGCTTCCGGAG

                   
       1405 GGGATTC
         65 GGGATTC

                                             ***    *          **           
       1412 AACATCTAATAAATCTGCAAAGGCTTTCTCTCGTTTATTTGCCCAATTTAATGTCGCTTCCGGA
          1 AACATCTAATAAATCTGCAAA-GCTTTCTCTCGGGAATTTTCCCAATTTAACATCGCTTCCGGA

       1476 TGAGATGCGT


Statistics
Matches: 121,  Mismatches: 13, Indels: 4
        0.88            0.09        0.03

Matches are distributed among these distances:
  71    3  0.02
  72  117  0.97
  73    1  0.01

ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34


Consensus pattern (71 bp):   
AACATCTAATAAATCTGCAAAGCTTTCTCTCGGGAATTTTCCCAATTTAACATCGCTTCCGGAGG
GGATTC
Done.