Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009519.1 Kokia drynarioides strain JFW-HI SEQ_124230, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4851
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35


Found at i:83 original size:12 final size:13

Alignment explanation


    Indices: 60--89  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

         50 ACTTAGGTGT

                         
         60 TTATTGTTTATTA
          1 TTATTGTTTATTA

                         
         73 TTATT-TTTATTA
          1 TTATTGTTTATTA

                 
         85 TTATT
          1 TTATT

         90 ATGCTCAATC


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.71
  13    5  0.29

ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73


Consensus pattern (13 bp):   
TTATTGTTTATTA
Done.