Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009523.1 Kokia drynarioides strain JFW-HI SEQ_124234, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6436
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37


Found at i:602 original size:79 final size:78

Alignment explanation


    Indices: 454--624  Score: 216
    Period size: 79  Copynumber: 2.2  Consensus size: 78

        444 AGGGTGTTAC

                 *     *          *  *  *                          *        *
        454 ACACTTGGTGCTAGGATTTAACGGATATTGTTGGTTAATCCAACTAGAGCTAGGCTCACAATCGT
          1 ACACTGGGTGCCAGGATTTAACAGACATCGTTGGTTAATCCAACTAGAGCTAGGCGCACAATCGC

                         
        519 GGTTTATCCGCTA
         66 GGTTTATCCGCTA

             *                  *                               *        * * 
        532 GGCACTGGGTGCCAGGATTTGACAGACATCGTTGGTTAATCCAACTAGAGCTGGGCGCACATTTG
          1 -ACACTGGGTGCCAGGATTTAACAGACATCGTTGGTTAATCCAACTAGAGCTAGGCGCACAATCG

                          
        597 CGGTTTATCCGCTA
         65 CGGTTTATCCGCTA

                          
        611 ACAACTGGGTGCCA
          1 AC-ACTGGGTGCCA

        625 TATTCGTCGG


Statistics
Matches: 78,  Mismatches: 13, Indels: 2
        0.84            0.14        0.02

Matches are distributed among these distances:
  78    1  0.01
  79   77  0.99

ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28


Consensus pattern (78 bp):   
ACACTGGGTGCCAGGATTTAACAGACATCGTTGGTTAATCCAACTAGAGCTAGGCGCACAATCGC
GGTTTATCCGCTA
Done.