Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009528.1 Kokia drynarioides strain JFW-HI SEQ_124240, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2157
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34


Found at i:1184 original size:6 final size:6

Alignment explanation


    Indices: 1173--1211  Score: 51
    Period size: 6  Copynumber: 6.5  Consensus size: 6

       1163 TGATCAAAAT

                                      *   *  *           
       1173 TGAAAG TGAAAG TGAAAG TGAAAT TGGAAT TGAAAG TGA
          1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA

       1212 TATGAATTGT


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   6   29  1.00

ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23


Consensus pattern (6 bp):   
TGAAAG

Done.