Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009529.1 Kokia drynarioides strain JFW-HI SEQ_124241, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1936
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.35


Found at i:1171 original size:17 final size:17

Alignment explanation


    Indices: 1149--1187  Score: 51
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       1139 AGGTGGAGAA

                  *  *    *  
       1149 CTTGTTTGTTGAGAGTT
          1 CTTGTTCGTAGAGAATT

                             
       1166 CTTGTTCGTAGAGAATT
          1 CTTGTTCGTAGAGAATT

                 
       1183 CTTGT
          1 CTTGT

       1188 CAAAGTGGAG


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.15, C:0.10, G:0.26, T:0.49


Consensus pattern (17 bp):   
CTTGTTCGTAGAGAATT
Done.