genome.fa.s9531.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009531.1 Kokia drynarioides strain JFW-HI SEQ_124243, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  306337

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1244--1293	20	2.4	20	83	6	55	50	0	2	48	1.12
1408--1469	32	1.9	32	96	0	115	37	9	9	43	1.71
4842--5202	90	4.1	87	76	7	302	39	1	21	36	1.64
4841--5203	30	12.3	29	75	7	203	39	1	21	36	1.63
5090--5230	60	2.3	60	80	2	158	38	4	24	32	1.75
7602--7659	29	2.0	29	89	0	89	17	17	32	32	1.93
9575--9614	21	1.9	21	100	0	80	17	20	17	45	1.86
21707--21746	14	2.7	15	88	3	64	37	20	5	37	1.74
21897--21922	3	8.7	3	100	0	52	34	0	0	65	0.93
22779--22832	17	3.1	17	76	13	56	44	0	1	53	1.11
22779--22832	18	2.9	20	68	18	53	44	0	1	53	1.11
22797--23145	175	2.0	172	85	3	468	43	9	8	39	1.67
24523--24593	36	2.0	36	94	0	124	12	16	22	47	1.80
27254--27348	43	2.2	43	98	0	181	23	2	34	40	1.66
29415--29466	27	1.9	27	92	7	88	25	25	0	50	1.50
29787--29832	19	2.5	18	86	6	65	43	0	6	50	1.28
29889--29959	18	3.9	17	70	14	52	40	5	0	53	1.24
31177--31210	17	1.9	18	94	5	61	17	11	5	64	1.45
48303--48411	54	2.0	54	94	0	191	33	7	22	35	1.82
49416--49456	6	6.8	6	91	0	64	34	60	4	0	1.18
55929--55968	18	2.2	19	86	13	57	62	10	12	15	1.54
56357--56425	3	23.0	3	77	16	54	1	24	0	73	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56365--56425	18	3.6	18	78	17	67	1	22	0	75	0.89
56357--56425	30	2.3	31	87	7	106	1	24	0	73	0.91
56357--56425	15	4.6	15	83	5	95	1	24	0	73	0.91
66219--66271	26	2.0	26	85	10	72	45	0	1	52	1.11
66235--66285	25	2.0	26	88	3	77	41	0	0	58	0.98
66737--66761	13	1.9	13	100	0	50	48	8	16	28	1.74
70164--70195	3	10.7	3	100	0	64	34	31	0	34	1.58
70194--70225	3	10.7	3	100	0	64	34	0	0	65	0.93
81946--82048	54	1.9	54	84	11	140	18	28	22	31	1.97
82629--82673	24	2.0	23	83	12	58	46	11	15	26	1.79
82674--83360	343	2.0	343	99	0	1356	28	18	17	35	1.94
99408--99463	22	2.6	22	78	15	64	80	0	14	5	0.88
99433--99462	12	2.5	12	88	0	51	83	0	16	0	0.65
103477--103623	74	2.0	74	93	2	251	21	29	9	40	1.84
106287--106343	18	3.1	19	85	10	73	38	0	5	56	1.22
109043--109099	30	1.9	30	85	0	78	29	21	7	42	1.79
111341--111870	176	3.0	176	97	0	988	42	11	11	35	1.76
113209--113482	139	2.0	138	91	2	451	35	18	16	28	1.93
125637--125683	23	2.0	23	100	0	94	17	12	17	53	1.73
130188--130230	5	8.8	5	90	10	63	83	0	16	0	0.64
130193--130231	7	5.4	7	82	17	53	84	0	15	0	0.62
131091--131526	101	4.3	100	76	6	355	36	16	17	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131546--131701	50	3.1	50	73	10	156	37	18	19	24	1.94
131544--131739	100	2.0	100	87	0	284	36	17	19	26	1.94
131544--131774	100	2.3	100	82	3	250	35	18	19	26	1.95
131596--131925	150	2.2	150	91	0	534	34	18	20	26	1.96
131746--131982	100	2.4	100	84	1	287	35	19	20	24	1.96
131596--131925	50	6.6	50	69	12	169	34	18	20	26	1.96
131597--131974	150	2.5	150	85	3	395	35	18	19	26	1.95
131954--132272	143	2.2	143	84	2	399	36	19	18	26	1.95
132177--132271	50	1.9	50	80	8	113	36	18	17	26	1.94
132002--132318	143	2.2	143	83	2	395	33	18	19	27	1.96
134072--134099	3	9.3	3	100	0	56	32	0	0	67	0.91
134072--134142	9	7.1	10	76	16	51	26	1	4	67	1.17
139316--139346	4	7.8	4	100	0	62	25	22	0	51	1.48
148217--148245	15	2.0	15	93	6	51	41	0	17	41	1.49
154156--154221	17	3.9	17	83	0	78	16	19	12	51	1.75
154929--155023	49	1.9	49	86	0	136	31	18	12	36	1.89
168403--168710	154	2.0	154	96	0	562	31	16	21	30	1.96
171453--171519	27	2.5	27	78	9	73	67	2	28	1	1.14
174582--174988	107	3.9	106	83	9	543	52	5	3	38	1.42
174687--174988	106	3.0	96	81	13	362	52	5	3	38	1.42
174919--174966	19	2.5	20	75	21	50	54	0	0	45	0.99
195043--195104	30	2.1	30	93	0	106	17	11	22	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204787--204925	64	2.2	64	96	0	251	20	23	17	38	1.93
204962--205000	15	2.6	15	87	0	51	17	10	30	41	1.83
206813--206847	10	3.4	10	92	4	52	54	11	5	28	1.59
207538--207562	12	2.1	12	100	0	50	40	16	8	36	1.77
224144--224173	14	2.2	14	94	5	53	40	10	20	30	1.85
224487--224531	22	2.0	22	100	0	90	44	17	8	28	1.79
224601--224640	16	2.5	15	84	11	53	2	10	0	87	0.63
224601--224640	11	3.6	11	89	0	62	2	10	0	87	0.63
225191--225225	17	2.0	18	88	5	54	60	11	14	14	1.60
233547--233579	14	2.4	14	95	5	59	36	9	27	27	1.87
238391--238423	2	17.0	2	93	6	59	51	0	0	48	1.00
241534--241577	21	2.1	21	87	8	63	68	2	4	25	1.20
241529--241571	4	10.5	4	80	5	50	69	0	4	25	1.07
241636--241699	29	2.2	30	83	8	87	43	15	4	35	1.68
246249--246304	22	2.5	22	88	2	76	46	7	19	26	1.76
248234--248288	26	2.1	26	100	0	110	34	3	10	50	1.55
249310--249489	96	1.9	96	91	2	299	24	20	21	33	1.97
249465--249717	101	2.5	101	83	2	310	26	17	18	37	1.93
249228--249715	50	9.8	50	70	9	237	25	19	19	35	1.96
249289--249647	146	2.4	146	83	5	420	24	20	20	34	1.97
256882--256958	36	2.1	36	100	0	154	49	5	16	28	1.67
257203--257259	20	2.9	20	82	7	64	78	5	1	14	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259020--259062	21	2.0	21	86	0	59	51	13	4	30	1.62
260922--260960	18	2.2	17	86	4	51	23	2	2	71	1.10
261175--261217	20	2.2	20	91	8	70	13	0	11	74	1.07
268023--268082	21	2.9	21	82	0	66	33	20	15	31	1.93
268254--268293	21	1.9	21	84	0	53	35	25	15	25	1.94
271044--271087	22	2.2	19	88	12	61	36	15	0	47	1.46
273321--273465	70	2.1	70	88	0	209	31	22	4	41	1.73
298209--298265	24	2.4	24	82	5	80	59	5	31	3	1.36
298222--298263	12	3.5	12	81	12	59	64	2	33	0	1.07
298693--298740	17	2.8	17	90	0	69	20	14	12	52	1.74
301140--301407	101	2.7	97	82	4	315	36	19	17	27	1.93
302083--302126	19	2.4	18	82	10	54	77	15	6	0	0.97
303315--303364	22	2.3	21	86	3	64	18	0	8	74	1.06
303354--303441	26	3.3	27	73	19	87	13	7	9	69	1.36

Tables:   1

The End!