genome.fa.s9539.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009539.1 Kokia drynarioides strain JFW-HI SEQ_124251, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107024

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4375--4477	23	4.5	23	84	7	113	10	22	24	42	1.85
11282--11381	23	4.4	23	83	7	98	11	22	23	44	1.84
11305--11377	23	3.2	22	88	5	101	12	21	26	39	1.89
12645--12695	20	2.6	20	93	3	86	17	11	17	52	1.73
12929--12960	14	2.1	16	88	11	50	37	0	18	43	1.51
17068--17110	19	2.3	19	79	0	50	62	0	0	37	0.95
17531--17575	18	2.3	20	88	7	67	62	2	2	33	1.20
19560--19615	28	2.0	29	82	10	71	55	10	1	32	1.45
28724--28758	2	17.5	2	100	0	70	0	51	0	48	1.00
33509--33556	25	2.0	24	84	8	62	14	31	14	39	1.86
35003--35249	127	1.9	127	86	0	350	39	8	6	45	1.60
35450--35488	2	19.5	2	83	0	51	41	0	7	51	1.31
35450--35488	10	3.9	10	93	0	60	41	0	7	51	1.31
44382--44417	6	6.0	6	93	0	54	83	11	0	5	0.80
46524--46586	20	3.3	21	75	22	68	30	0	3	66	1.07
46965--47013	24	2.1	24	81	11	57	20	14	6	59	1.56
52479--52517	2	19.0	2	94	5	69	48	0	2	48	1.15
57386--57427	20	2.1	20	100	0	84	47	0	28	23	1.52
58439--58480	18	2.4	18	88	4	59	47	2	9	40	1.49
58883--58922	13	3.0	14	89	10	66	37	17	0	45	1.49
58869--58922	26	2.0	27	86	10	76	37	16	1	44	1.59
58883--58929	13	3.6	13	82	8	60	40	19	0	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60422--60612	101	1.9	100	82	6	242	31	5	9	53	1.55
67411--67768	29	12.5	28	71	14	180	34	24	3	37	1.72
67411--67799	57	6.8	58	79	10	322	34	24	3	37	1.73
73355--73418	31	2.1	31	93	0	110	25	23	9	42	1.84
73948--74626	49	13.8	49	72	10	391	39	18	23	18	1.92
73960--74691	99	7.4	100	86	3	914	40	18	22	18	1.92
73955--74691	199	3.7	198	86	3	963	40	18	23	18	1.92
75001--75185	39	4.7	39	73	7	169	25	31	20	22	1.98
74920--75180	117	2.2	117	88	0	387	25	29	21	23	1.99
75001--75217	78	2.8	77	76	5	220	25	31	20	22	1.98
75722--75757	18	2.0	18	88	0	54	61	19	19	0	1.35
75826--75932	17	5.9	17	71	14	70	41	3	2	52	1.34
75827--75917	6	15.7	6	75	15	75	40	2	3	53	1.29
75827--75899	23	3.2	23	84	3	85	39	1	4	54	1.28
77668--77977	28	10.8	28	83	6	318	34	26	0	38	1.59
77668--77977	57	5.4	55	87	6	397	34	26	0	38	1.59
77668--77977	85	3.6	86	84	8	382	34	26	0	38	1.59
83200--83238	17	2.3	17	86	0	51	33	2	5	58	1.33
87890--87951	28	2.2	28	85	2	79	27	14	27	30	1.95
88054--88335	30	9.5	30	73	6	225	31	4	28	35	1.77
88054--88343	59	4.8	60	83	6	331	31	4	28	35	1.77
89419--89529	3	35.3	3	84	7	114	36	1	3	57	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90212--90308	17	5.6	17	70	11	72	54	5	3	37	1.38
96904--96944	18	2.4	17	83	4	55	34	0	4	60	1.18
97630--98007	189	2.0	189	97	0	711	41	9	13	35	1.78
98909--98940	2	16.0	2	100	0	64	50	0	0	50	1.00
101846--101919	36	2.1	36	97	0	139	32	29	5	32	1.80
106399--106500	46	2.2	46	94	1	177	48	11	7	32	1.69

Tables:   1

The End!