Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000954.1 Kokia drynarioides strain JFW-HI SEQ_112127, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 911

Length: 1519
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1059 original size:21 final size:21

Alignment explanation


    Indices: 1033--1075  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1023 TAGGGTTCAT

                         *       
       1033 TTGCCCCGGAGGAGTAGAGTA
          1 TTGCCCCGGAGGAATAGAGTA

                  *              
       1054 TTGCCCGGGAGGAATAGAGTA
          1 TTGCCCCGGAGGAATAGAGTA

             
       1075 T
          1 T

       1076 CGCGATGGCT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.26, C:0.16, G:0.37, T:0.21


Consensus pattern (21 bp):   
TTGCCCCGGAGGAATAGAGTA

Found at i:1202 original size:45 final size:45

Alignment explanation


    Indices: 1081--1206  Score: 180
    Period size: 45  Copynumber: 2.8  Consensus size: 45

       1071 AGTATCGCGA

                 *        *  *           **          *   
       1081 TGGCTTGTCAAACTCAGCCTGATATCCTTCCCTTGAGTATTGCGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTACGG

                        *             *                  
       1126 TGGCTCGTCAAATTGAGGCTGATATCATTGGCTTGAGTATTACGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTACGG

                                                
       1171 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGA
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGA

       1207 TGAGCTATGC


Statistics
Matches: 71,  Mismatches: 10, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  45   71  1.00

ACGTcount: A:0.20, C:0.21, G:0.26, T:0.33


Consensus pattern (45 bp):   
TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTACGG
Done.