Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009541.1 Kokia drynarioides strain JFW-HI SEQ_124253, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5154
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34

Warning! 5 characters in sequence are not A, C, G, or T


Found at i:3225 original size:15 final size:15

Alignment explanation


    Indices: 3202--3231  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       3192 GCGTCGCGGG

                           
       3202 TATGAATTGTCTTGA
          1 TATGAATTGTCTTGA

                *          
       3217 TATGTATTGTCTTGA
          1 TATGAATTGTCTTGA

       3232 AACTAGCAAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.23, C:0.07, G:0.20, T:0.50


Consensus pattern (15 bp):   
TATGAATTGTCTTGA
Done.