Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009542.1 Kokia drynarioides strain JFW-HI SEQ_124254, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11995
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Warning! 22 characters in sequence are not A, C, G, or T
Found at i:774 original size:320 final size:311
Alignment explanation
Indices: 188--821 Score: 847
Period size: 320 Copynumber: 2.0 Consensus size: 311
178 AAAAAAACAA
* *
188 AAAGAGGGGTGCAACACGAGGAATTCCCAGCAGGTCACCCATCCTAGTACTACTCTCGCCCAAAC
1 AAAGAAGGGTGCAACACAAGGAATTCCCAGCAGGTCACCCATCCTAGTACTACTCTCGCCCAAAC
* * *
253 AGCGGAGTTCTGATGAGATCCGGTGCATCAGTGCTAGTATGACCGCACCCATTATGTTCCAAGCA
66 AGCGGAGTTCTGATGAGAACCGATCCATCAGTGCTAGTATGACCGCACCCATTATGTTCCAAGCA
* * *
318 ATCTATTTACACAAACGCTACCTTTCATCCCATTCGTGTATCGAATTTGAATGTAAATATACCCA
131 ATCTATTTACACAAACGCCACCTTTCATCCCATTCGTGCATCGAATTTGAATGTAAATACACCCA
* * *
383 AATAATGCTTGAGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATCTCCC
196 AATAATGCTCGAGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATCTCCA
* *
448 TGTATCCCATGAAGCTTTACTATTTCACAAAATTTCAAACTTACGTTAAAT
261 TGTATCCCATGAAGCTTTACTATTTCACAAAATTGCAAACTTACGATAAAT
* * *
499 AAAGAAGGGTGCAACACAAGGACTTCCCAGGAGGTCACCCATCCTAGTGCTACTCTCGCCCAAGC
1 AAAGAAGGGTGCAACACAAGGAATTCCCAGCAGGTCACCCATCCTAGTACTACTCTCGCCCAA--
* * * * * *
564 ACGCTTGACTATGGAGTTTTGATGGGAACCGATCCATTAGTGCTGGTATGATCGCACCCATTATG
64 A--C-AG-C---GGAGTTCTGATGAGAACCGATCCATCAGTGCTAGTATGACCGCACCCATTATG
* * * * * * *
629 TTCTACGCAATCTGTTTACATAAAGGCCACCTTTCATCCCATTCGTGCCTCGAATTTGACTGTAA
122 TTCCAAGCAATCTATTTACACAAACGCCACCTTTCATCCCATTCGTGCATCGAATTTGAATGTAA
* * * * * *
694 ATACATCTAAATAATGCTCGGGAAGTCATATTTTCGCGGATTAAAATAAAATAAAAACACTCTAA
187 ATACACCCAAATAATGCTCGAGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
*
759 TAA-CGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAAT
252 TAATC-TCCATGTATCCCATGAAGCTTTACTATTTCACAAAATTGCAAACTTACGATAAAT
819 AAA
1 AAA
822 ATAATACAAA
Statistics
Matches: 277, Mismatches: 36, Indels: 11
0.85 0.11 0.03
Matches are distributed among these distances:
311 58 0.21
313 1 0.00
315 1 0.00
316 1 0.00
317 1 0.00
319 1 0.00
320 214 0.77
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (311 bp):
AAAGAAGGGTGCAACACAAGGAATTCCCAGCAGGTCACCCATCCTAGTACTACTCTCGCCCAAAC
AGCGGAGTTCTGATGAGAACCGATCCATCAGTGCTAGTATGACCGCACCCATTATGTTCCAAGCA
ATCTATTTACACAAACGCCACCTTTCATCCCATTCGTGCATCGAATTTGAATGTAAATACACCCA
AATAATGCTCGAGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATCTCCA
TGTATCCCATGAAGCTTTACTATTTCACAAAATTGCAAACTTACGATAAAT
Found at i:1197 original size:15 final size:16
Alignment explanation
Indices: 1156--1198 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
1146 AATTGCAGAC
*
1156 ATACAATAAATAAAATA
1 ATACAA-AAAGAAAATA
1173 ATACAAAAAGAAAATA
1 ATACAAAAAGAAAATA
*
1189 A-AGAAAAAGA
1 ATACAAAAAGA
1199 GCGGTGCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 8 0.33
16 10 0.42
17 6 0.25
ACGTcount: A:0.74, C:0.05, G:0.07, T:0.14
Consensus pattern (16 bp):
ATACAAAAAGAAAATA
Found at i:1356 original size:347 final size:348
Alignment explanation
Indices: 499--6720 Score: 4631
Period size: 347 Copynumber: 17.5 Consensus size: 348
489 TACGTTAAAT
* * *
499 AAAGAAGGGTGCAACACAAGGACTTCCCAGGAGGTCACCCATCCTAGTGCTACTCTCGCCCAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * ** * * * * *
564 ACGCTTGACTATGGAGTTTTGATGGGAACCGATCCATTAGTGCTGGTATGATCGCACCCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* * * *
629 TTCTACGCAATCTGTTTACATAAAGGCCACCTTTCATCCCATTCGTGCCTCGAATTTGACTGTAA
131 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * * * * *
694 ATACATCTAAATAATGCTCGGGAAGTCATATTTTCGCGGATTAAAATAAAATAAAAACACTCTAA
196 ATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
*
759 TAACGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
*
824 AATACAAAGAGAAAAAAAAACAA
326 AATACAAAAAGAAAAAAAAACAA
* *
847 AAAGAGGGGTGCAACACGAGGAATTCCCAGGAGGTTACCCATCCTAGTACTACTCTCGCCCAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * *
912 ACTCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATCAGTGCTGGTATGATCGCTCTCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
** * * *
977 TTCTAAGAAATCTATTTACATACAGGCTACCTTTCATCCCATTCGTGTCTCGAATTTGAATGTAA
131 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * * *
1042 ATATACCTAAATAATGCTCGGGAAGACATATTTTCGCTGATAAAAATACAATAAAAACACGTTTA
196 ATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACG-CTA
* * * * * * *
1107 A-AATGTCCATGTATCACATGAAGCATTACAATTTCTCAAAATTGCAGACATACAATAAATAAAA
260 ATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAA
* *
1171 TAATACAAAAAG-AAAATAAAGAA
325 TAATACAAAAAGAAAAAAAAACAA
* * * * *
1194 AAAGAGCGGTGCAACACGAGGACTTCCAAGCAGGTCACCCATCCTAGTATTACTCTTGCCCAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * * *
1259 ACGCTTAACTGCGGAGTTCTGATGGTATCCGGTACATCAGTGCTGGTATGATCGCACTCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
** * * *
1324 TTCTAAGCAATCTATTTACATAAAGACTACCTTTCATCCCATTCGTGTCTCAAATTTGAATGTAA
131 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * * * * *
1389 ATATACCCAAACAATACTCGAGAAGACGTATTTTCGCGGATAAAAATACAATAAAAACACGTTAA
196 ATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
* * * *
1454 TAATGTCCATGTATCACATGAAGCATTACTATTTCGCAAAATTGCAGACTTACAATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
* *
1519 AATACAAAAAG-AAAATAAAGAA
326 AATACAAAAAGAAAAAAAAACAA
* * *
1541 AAAGAGGGGTGCAACATGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCAAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * *
1606 ACACTTAACTGCGGAGTTATGATGGGATCCAGTGCATTAGTGCTGGTATGATCTCACCCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* * *
1671 TTCTTCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCATGCCACGAATTTGAATGTAA
131 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * *
1736 GTATACCCAAATAATGCTCGAGAAGATATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
196 ATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
* *
1801 TAATGTCAATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGGAAACTTACGATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
*
1866 AATACAAAAACAAAAAAAAACAAAACAA
326 AATAC---AA-AAAGAAAAA-AAAACAA
* *
1894 AAAGAGGGGTGCAACACGAGCACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCTCCCAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * *
1959 ACACTTAACTGCGGAGTTCTGATGAGATCCGGTGCATTAGTGCTGAAATGATCGCACCCACTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* *
2024 TTTTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTTGAATTTGAATGTAA
131 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * *
2089 ATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCAGATAAAAATAAAATAAAGACACGCTAA
196 ATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
*
2154 TAATGTCCATG-ATCCCATGAAGCTTTACTATTTTGCAAAATTGCAAACTTACGATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
* *
2218 TATACAAATAGAAAAAAAAACAA
326 AATACAAAAAGAAAAAAAAACAA
* * * *
2241 AAAGAGGGGTGAAACATGAGGACTTCCCGGGAGGTCACCCATCCTAGTACTACTCTCGCCTAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * *
2306 ACACTTAACTGCGGAGTTTTGATGGGATCCGGTGCATTAGTGCAGAAATGATCGCACCCATTACG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* * * *
2371 TTTTGCGCAATCTATTTACATAAAGGCTACCTTTGATCCCATTCGTGCCTTGAATTTGAATGAAA
131 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * *
2436 ATATGCCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAGACACGCTAA
196 ATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
*
2501 TAATGTCCATG-ATCCCATGAAGCTTTACTATTTC-CAAAATTGCAAACTTAAGATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
* *
2564 AATATAAAAAGAAAAAAAAAAAAA
326 AATACAAAAAG-AAAAAAAAACAA
* * * * * *
2588 AAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATTCTAGTACTACACACACGCAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * *
2653 ACACTTAACTGCGGAGTTCTGAAGGGATTCGGTGCATTAGTGCAGGAATGATCTCACCCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
*
2718 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGGAA
131 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * *
2783 GTATACCCAAATAATGCTCAGGAAGACATATTTTCACGGAT-AAAATAAAATAAAAACACGCTAA
196 ATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
* * *
2847 TAATATCCATGTATCCCATGAAACTTTACTATTTCGCAAAATTGCTAACTTACGATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
2912 AATACAAAAAGAAAAAAAAAACAA
326 AATACAAAAAG-AAAAAAAAACAA
* * * * * * *
2936 AAAGAAGGGTACAACACGAGGACTTCCAAGTAGGTCACCCATCCTAGTGCTATTCTCGCCCAGGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * * *
3001 ACGCTTAACTACGGAGTTCTGAAGGGATCCGATGCATTAGTGCTAGAATGATCTCACCCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
*** * * ** * *
3066 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCAGGAG-GTCACCCATCCT-AGTAGT
131 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAAT-TTGAAT-GT
** * * ** * * * * ** **** ***
3129 ACTTTTGCCC-AAGCACGCTTAACTGCAGAGTTC-TGATGGGATC-CGATGCATCAGTGCTGGTA
194 AAATATACCCAAATAATGC-T--CGGGA-AG-ACAT-AT--TTTCGCG--G-AT-AAAAATAAAA
* *** * ** * ** * * * **
3191 TGATCGCAC-C-ATTTTTGTTCTAAGCAATCTATTTACATAAAG-GTTACCT-TTCATCCCATTC
247 TAAAAACACGCTAATAATG-TC----C-ATGTA-TCCCATGAAGCTTTA-CTATT--TCGCA-AA
* * * * *
3252 GTGTCGCAAATTTGAATG-TAAATATACGCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAA
301 AT-T-GCAAACTT--ACGAT-AA-ATA---AAATAAT--AC---AA-A---A-------AGA-AA
*
3316 AAATAAATAA
340 AAA-AAACAA
* * * * * *** * * * * *** * * * * *
3326 AAACA-CGCT--AATAATGTCCATGTATACCATGAAGCTTTGCTATTTCGCAAAATTTCAAACTC
1 AAAGAGGGGTGCAA-CACGAGGA-CT-TCCCA-GGAGGTCACCCA--TC-C--TAGTAC-TACTC
* *** ** * * * ** *** ** *** *** ** *
3388 ACGATAAATAAAAAAATACAAAAAGAAAAAAAAATAAAAAAAGA-AGGGTGCATCACAAG-GACT
56 TCG-CCCA-AGCACACT--TAACTG---CGGAGTTCTGATGGGATCCGGTGCAT---TAGTG-C-
** * * * * * *
3451 TCTCAA-GA-GGTCACCCATCCTAGTGCTACTCTTGCCCAAGCACACTTA-ACTACAGAG-T---
109 T-GGAATGATCG-CACCCAT--TA-TG-T--TC-TGCGCAATC-TATTTACA-TAAAG-GCTACC
* *** * * ** * * * *
3509 TTTGATAGGATCCGGTG--T-G--TTAGTG-CTGGT--ATGAT-CGCTCTCATTATGTTC-TG-C
162 TTTCATCCCATTC-GTGCCTCGAATT--TGAAT-GTAAAT-ATAC-C-CAAATAATGCTCGGGAA
** ** *** * *** * **
3563 G-CA-ATCTGTTTAC--ATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATATAAAT
220 GACATAT-T-TTCGCGGATAAA-AATA-AAATAAAAACA--C--G-CT--AA--T-AATGTCCAT
* * *** ** ** * *
3624 ATA-CCTAAAT-AATGCACGGGAAGACGTATTTTCGC-GGA-T--AAAAATACAATAAAAACACG
271 GTATCC--CATGAA-G--C---TTTAC-TA-TTTCGCAAAATTGCAAACTTACGATAAATA-A--
* *** ** * ** * *
3683 TTAATAATGTCCATGTATCACATGAAGCAT
323 --AATAA--TACAAAAAGAAAAAAAAACAA
* ** **** * * * ** ** * *** * * ** ** * *** ***
3713 TACTATTTCT-CAAAATTGCA-GACTT-ACAATAAATAAAATAATACAAAAAGAAAATAAAGAAA
1 AAAGAGGGGTGCAACA-CG-AGGACTTCCCAGGAGGT-CACCCATCCTAGTA-CTACTCTCGCCC
*** * * * * * * * * *
3775 AAG-AGGGGTGCAACATGAGGACTTCTCA-GGAGGTCAC---CCATCCTAGTACT--ACT-TTCG
62 AAGCA-CACT-TAAC-TGCGGAGTTCTGATGG-GATC-CGGTGCAT--TAGTGCTGGAATGATCG
* ** * * * * * * * * **
3832 C-CCAAGCACGCTTAACTACGGAGTTTTGATGGGATCCGATGCATTAGTGCT-GGTATGATCGCA
120 CACCCATTATG-TT--CTGCGCA-ATCT-AT---TTAC-AT--A-AAG-GCTACCT-T--T--CA
* * * ** ** * **
3895 -CCCATT-ATGTTCTAAGCAATCTATTTACATAAAGGCTACTTTCATCCC-ATTCGTGTCTCGAA
167 TCCCATTCGTG-CCT-CG-AAT-T-TGAATGTAAA---TA---T-A-CCCAAATAATG-CTCG--
* * * *** *** * **
3957 TTTGAATGTAAATATACCCAAATAATGCTCGAGAAGACGT-ATTTTCGCGGATAAAAATACAATA
216 --GGAA-G-ACATAT-------T--T--TCGCG--GA--TAAAAAT--AAAATAAAAACACGCT-
* * ** * * * * *** * * *
4021 AAAACACGTTAAT-AATGTCCATGTA---TCAC-ATGAAGCATTACTATTTCGCAAAATTGCAGA
259 AATA-ATGTCCATGTAT-CCCATGAAGCTTTACTATTTCGCA--A--AATT-GCAAACTTAC-G-
* *
4081 CATACAATAAATAAAATA-ATACAAA-AAGAAAATAAAGAA
315 -ATA-AATAAA-ATAATACA-A-AAAGAA-AAAA-AAACAA
* * *
4120 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCAATCTTAGTACTACTCTCGCCCAAGT
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * *
4185 ACACTTAACTGTGGAGTTCTGATGGAATCCAGTGCATTAGTGCTGGTATGATCTCACCCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
*
4250 TTCTGCGCAATCTATTTACATAAAGGCTACCATTCATCCCATTCGTGCCTCGAATTTGAATGTAA
131 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * *
4315 GTATACCCAAATAATGCTCGAGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
196 ATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
* * *
4380 TAATGTCAATGTATCCCATCAAGCTTTACTATTTTCGCAATATTGCAAACTTACGATAAATAAAA
261 TAATGTCCATGTATCCCATGAAGCTTTACTA-TTTCGCAAAATTGCAAACTTACGATAAATAAAA
4445 TAATACAAAAAG--AAAAAAA-AA
325 TAATACAAAAAGAAAAAAAAACAA
* * *
4466 ACA-A-------AACACGAGGACTTCGCAGGAGGTCACCCATCCTAGTGCTACTCTCGCCCAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
** * * ** * *
4523 ACGGTTAGCTACAAAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCTCCCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* * * * *
4588 TTCTGCACAATCTGTTTACATAAAGGCTACCATTCATCTCATTCGTGCCTTGAATTTGAATGTAA
131 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * * *
4653 ATATACCTAAATAATGCTCGGGAAGACGTATTTTCGTGGATAAAAATAAAATAAAAACACGTTAA
196 ATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
** * ** *
4718 TAATGTCCATGTATCGTATGAAGCATTACTATTTCGCAAAATTGCAAACTTAAAATAAATAAAAC
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
*
4783 AATACAAATAG-AAAAAAAACAA
326 AATACAAAAAGAAAAAAAAACAA
* * * * * * *
4805 AAAGTGGGATGCAACACGAGGACTTCCCAGAAGGTCACCTATCCTAGAACTACTCTCGCCCGAGA
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * ** *
4870 ACGCTTAACTGCGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATAACACCCTTTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* *
4935 TTTTGCACAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
131 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
** * *
5000 ATATACCC-AATAATGCTCATGAAGACGTATTTTTGCGGATAAAAATAAAATAAAAACACGCTAA
196 ATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
*
5064 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTCCAAACTTACGATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
* *
5129 AGTACGAAAAGAAAAAAATAACAA
326 AATACAAAAAGAAAAAAA-AACAA
*
5153 AAAGAGGGGTGCAACACGAGGACTTCCCAATG-GGTCACCCATCCTAGTACTACTCTCGCCCAAG
1 AAAGAGGGGTGCAACACGAGGACTTCCC-AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
** * * * ** * ** *
5217 CATGCTTAACTTCGAAGTTTTGATGAAATCCGGTGCATTAGTGCCGTTATGATCGCAACCATTAT
65 CACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTAT
* * * * * * *
5282 ATTATGTGCAATCTATTTACATAAAGTCTATCTTTTATCCCATTCGTGCCTAGAATTTGAATGTA
130 GTTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTA
* *
5347 AATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAATAACACGCTA
195 AATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTA
*
5412 ATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTCCAAACTTACGATAAATAAAA
260 ATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAA
* *
5477 TAGTACGAAAAGAAAAAAAAACAA
325 TAATACAAAAAGAAAAAAAAACAA
* * *
5501 AAAGAGGGGTGCAACACGAGGACTTCCCAAGG-GGTCACCCATCCTAGTACTACTTTCACACAAG
1 AAAGAGGGGTGCAACACGAGGACTTCCC-AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
* * * ** * ** *
5565 CACGCTTAACTTCGGAGTTTTGATGAAATTCGGTGCATTAGTGCTGTTATGATCGCAACCATTAT
65 CACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTAT
* * * * * *
5630 ATTATGCACAATCTATTTACATAAAGTCTATCTTTCATCCCATTCGTGCCTCGAATTTAAATGTA
130 GTTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTA
* * * **
5695 AATATACCCAAATAATGCTCGCGAAGACATATTTTCACGGATAATAATAAAATAGTAACACGCTA
195 AATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTA
* * *
5760 ATAATGTCGATGTATCCCATGAAGCTTTACTATTTCGCAAAATCGCAAACTTACAATAAATAAAA
260 ATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAA
5825 TAATAC-AAAAGAAAAAAAAACAA
325 TAATACAAAAAGAAAAAAAAACAA
* * * *
5848 AAAAAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCTTAGTACAACTCTCGCCCAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * **
5913 ACACTTAACTGCGAAGTTCTGATGGGATCCGGTGCAATAGTGCT-GATATGATAACACCCATTAT
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGA-ATGATCGCACCCATTAT
* * *
5977 GTTTTGCACAATATATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTA
130 GTTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTA
* * * * * *
6042 ATTATACCAAAATAATGCCCGGGAAGACGTATTTTCGCGAATAAAAATAAAATAAAAACACGATA
195 AATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTA
* * *
6107 ATATTGTCCATGTATCCCATGAAGCTTTACAATTTCGCCAAATTGCAAACTTACGATAAAT-AAA
260 ATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAA
6171 TAATAC-AAAAGAAAAAAAAACAA
325 TAATACAAAAAGAAAAAAAAACAA
* * * *
6194 AAAGAGGGGTGTAACACGAGGACTTCCCAGGAGGTCACCCATCTTAGTACTACTCTTGCCCAAGA
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * * * **
6259 ACACTTAACAGCGGAGTTCTGATGAGATTCGATGCAATAGTGCT-GATTTGATAACACCCATTAT
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGA-ATGATCGCACCCATTAT
* * * * * *
6323 GTTTTGCACAATTTATTTACATAAAGTCTCCCTTTCATCCCATTCGTGCCTCGAATTGGAATGTA
130 GTTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTA
* * * * ** *
6388 AATATACCAAAATAATGCCCGAGAAGACGTATTTTCGCAAATAAAAATAAAATAAAAACACGATA
195 AATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTA
*
6453 ATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAGACTTACGATAAATAAAA
260 ATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAA
**
6518 TAATACAAGTAGAAAAAAAATACAA
325 TAATACAAAAAGAAAAAAAA-ACAA
* * * * * *
6543 AAAGAAGGGTGCAACACGAGGACTTTCCAAGAGGTCACCAATCCCAGTACTACTCTCGCCTAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * ** *
6608 ACGCTTAACTGCGGAGTTCTGATGCGATCCGGTGCATTAGTGCTGGTATGATAACACCCATTATA
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
*
6673 TTCTGCGCAATCTATTTACACAAAGGCTACCTTTCATCCCATTCGTGC
131 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGC
6721 GTCACCCATC
Statistics
Matches: 4731, Mismatches: 850, Indels: 585
0.77 0.14 0.09
Matches are distributed among these distances:
337 40 0.01
338 256 0.05
339 4 0.00
345 1 0.00
346 518 0.11
347 1638 0.35
348 1015 0.21
349 296 0.06
350 9 0.00
351 12 0.00
352 69 0.01
353 257 0.05
354 2 0.00
355 2 0.00
356 24 0.01
357 10 0.00
358 17 0.00
359 5 0.00
360 3 0.00
361 7 0.00
362 9 0.00
363 12 0.00
364 5 0.00
365 5 0.00
366 6 0.00
367 8 0.00
368 1 0.00
369 8 0.00
370 6 0.00
371 2 0.00
372 1 0.00
373 11 0.00
374 9 0.00
375 5 0.00
376 9 0.00
377 1 0.00
378 7 0.00
379 5 0.00
380 12 0.00
381 14 0.00
382 2 0.00
383 2 0.00
384 1 0.00
385 4 0.00
386 6 0.00
387 9 0.00
388 17 0.00
389 15 0.00
390 16 0.00
391 10 0.00
392 8 0.00
393 9 0.00
394 4 0.00
395 5 0.00
396 6 0.00
397 7 0.00
398 9 0.00
399 16 0.00
400 3 0.00
401 8 0.00
402 6 0.00
403 19 0.00
404 36 0.01
405 23 0.00
406 18 0.00
407 44 0.01
408 19 0.00
409 9 0.00
410 22 0.00
411 15 0.00
412 8 0.00
413 7 0.00
414 9 0.00
415 9 0.00
416 2 0.00
417 2 0.00
418 4 0.00
419 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (348 bp):
AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
ATATACCCAAATAATGCTCGGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
AATACAAAAAGAAAAAAAAACAA
Found at i:1544 original size:15 final size:16
Alignment explanation
Indices: 1504--1545 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
1494 ATTGCAGACT
*
1504 TACAATAAATAAAATAA
1 TACAA-AAAGAAAATAA
1521 TACAAAAAGAAAATAA
1 TACAAAAAGAAAATAA
*
1537 -AGAAAAAGA
1 TACAAAAAGA
1546 GGGGTGCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 8 0.35
16 10 0.43
17 5 0.22
ACGTcount: A:0.74, C:0.05, G:0.07, T:0.14
Consensus pattern (16 bp):
TACAAAAAGAAAATAA
Found at i:1861 original size:694 final size:694
Alignment explanation
Indices: 499--10308 Score: 7730
Period size: 695 Copynumber: 13.7 Consensus size: 694
489 TACGTTAAAT
* * *
499 AAAGAAGGGTGCAACACAAGGACTTCCCAGGAGGTCACCCATCCTAGTGCTACTCTCGCCCAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * ** * * * * *
564 ACGCTTGACTATGGAGTTTTGATGGGAACCGATCCATTAGTGCTGGTATGATCGCACCCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* * *
629 TTCTACGCAATCTGTTTACATAAAGGCCACCTTTCATCCCATTCGTGCCTCGAATTTGACTGTAA
131 TTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * * * * * *
694 ATACATCTAAATAATGCTCGGGAAGTCATATTTTCGCGGATTAAAATAAAATAAAAACACTCTAA
196 ATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
*
759 TAACGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
* * * *
824 AATACAAAGAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGAATTCCCAGGAGGTTACCCAT
326 AATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCAT
* *
889 CCTAGTACTACTCTCGCCCAAGCACTCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATCAGTG
391 CCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
* * * * *
954 CTGGTATGATCGCTCTCATTATGTTCTAAGAAATCTATTTACATACAGGCTACCTTTCATCCCAT
456 CTGGTATGATCGCACCCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCAT
* * * * *
1019 TCGTGTCTCGAATTTGAATGTAAATATACCTAAATAATGCTCGGGAAGACATATTTTCGCTGATA
521 TCGTGCCACGAATTTGAATGTAAATATACCCAAATAATGCTCGAGAAGACATATTTTCGCGGATA
* * * * *
1084 AAAATACAATAAAAACACGTTTAA-AATGTCCATGTATCACATGAAGCATTACAATTTCTCAAAA
586 AAAATAAAATAAAAACACG-CTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTC-CAAAA
* * * *
1148 TTGCAGACATACAATAAATAAAATAATACAAAAAGAAAATAAAGAA
649 TTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAGAA
* * * * *
1194 AAAGAGCGGTGCAACACGAGGACTTCCAAGCAGGTCACCCATCCTAGTATTACTCTTGCCCAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * * *
1259 ACGCTTAACTGCGGAGTTCTGATGGTATCCGGTACATCAGTGCTGGTATGATCGCACTCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* * * *
1324 TTCTAAGCAATCTATTTACATAAAGACTACCTTTCATCCCATTCGTGTCTCAAATTTGAATGTAA
131 TTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * * * *
1389 ATATACCCAAACAATACTCGAGAAGACGTATTTTCGCGGATAAAAATACAATAAAAACACGTTAA
196 ATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
* * * *
1454 TAATGTCCATGTATCACATGAAGCATTACTATTTCGCAAAATTGCAGACTTACAATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
* * *
1519 AATACAAAAAG-AAAATAAAGAAAAAGAGGGGTGCAACATGAGGACTTCCCAAGAGGTCACCCAT
326 AATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCAT
* * *
1583 CCTAGTACTACTCTCGCCAAAGCACACTTAACTGCGGAGTTATGATGGGATCCAGTGCATTAGTG
391 CCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
* *
1648 CTGGTATGATCTCACCCATTATGTTCTTCGCAATCTATTTACATAAAGGCTACCTTTCATCCCAT
456 CTGGTATGATCGCACCCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCAT
* * *
1713 TCATGCCACGAATTTGAATGTAAGTATACCCAAATAATGCTCGAGAAGATATATTTTCGCGGATA
521 TCGTGCCACGAATTTGAATGTAAATATACCCAAATAATGCTCGAGAAGACATATTTTCGCGGATA
*
1778 AAAATAAAATAAAAACACGCTAATAATGTCAATGTATCCCATGAAGCTTTACTATTTCGCAAAAT
586 AAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTC-CAAAAT
* * *
1843 TGGAAACTTACGATAAATAAAATAATACAAAAACAAAAAAAAACAAAACAA
650 TGCAAACTTACGATAAATAAAATAATAC----A-AAAAGAAAA-AAAAGAA
* *
1894 AAAGAGGGGTGCAACACGAGCACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCTCCCAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * *
1959 ACACTTAACTGCGGAGTTCTGATGAGATCCGGTGCATTAGTGCTGAAATGATCGCACCCACTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* * *
2024 TTTTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTTGAATTTGAATGTAA
131 TTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* *
2089 ATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCAGATAAAAATAAAATAAAGACACGCTAA
196 ATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
*
2154 TAATGTCCATG-ATCCCATGAAGCTTTACTATTTTGCAAAATTGCAAACTTACGATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
* * * * **
2218 TATACAAATAGAAAAAAAAACAAAAAGAGGGGTGAAACATGAGGACTTCCCGGGAGGTCACCCAT
326 AATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCAT
* *
2283 CCTAGTACTACTCTCGCCTAAGCACACTTAACTGCGGAGTTTTGATGGGATCCGGTGCATTAGTG
391 CCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
* ** * * * *
2348 CAGAAATGATCGCACCCATTACGTTTTGCGCAATCTATTTACATAAAGGCTACCTTTGATCCCAT
456 CTGGTATGATCGCACCCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCAT
** * * * *
2413 TCGTGCCTTGAATTTGAATGAAAATATGCCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATA
521 TCGTGCCACGAATTTGAATGTAAATATACCCAAATAATGCTCGAGAAGACATATTTTCGCGGATA
*
2478 AAAATAAAATAAAGACACGCTAATAATGTCCATG-ATCCCATGAAGCTTTACTATTTCCAAAATT
586 AAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCCAAAATT
* * *
2542 GCAAACTTAAGATAAATAAAATAATATAAAAAGAAAAAAAAAAAAA
651 GCAAACTTACGATAAATAAAATAATACAAAAAG--AAAAAAAAGAA
* * * * * *
2588 AAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATTCTAGTACTACACACACGCAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * *
2653 ACACTTAACTGCGGAGTTCTGAAGGGATTCGGTGCATTAGTGCAGGAATGATCTCACCCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* *
2718 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGGAA
131 TTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * * *
2783 GTATACCCAAATAATGCTCAGGAAGACATATTTTCACGGAT-AAAATAAAATAAAAACACGCTAA
196 ATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
* * *
2847 TAATATCCATGTATCCCATGAAACTTTACTATTTCGCAAAATTGCTAACTTACGATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
* *
2912 AATACAAAAAGAAAAAAAAAACAAAAAGAAGGGTACAACACGAGGACTT-CCAAGTAGGTCACCC
326 AATACAAAAAG-AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAAG-AGGTCACCC
* * * * * * *
2976 ATCCTAGTGCTATTCTCGCCCAGGCACGCTTAACTACGGAGTTCTGAAGGGATCCGATGCATTAG
389 ATCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
* * * *
3041 TGCTAGAATGATCTCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCC
454 TGCTGGTATGATCGCACCCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCC
*** * ** * * ** * * ** * *
3106 AGGAG-GTCACCCATCCT-AGTAGTACTTTTGCCC-AAGCACGCTTAACTGCAG-AGTTC-TGAT
519 ATTCGTGCCACGAAT-TTGAAT-GTAAATATACCCAAATAATGC-T--C-G-AGAAG-ACAT-AT
** **** *** * *** * ** * **
3166 GGGATC-CGATGCATCAGTGCTGGTATGATCGCAC-C-ATTTTTGTTCTAAGCAATCTATTTACA
575 --TTTCGCG--G-AT-AAAAATAAAATAAAAACACGCTAATAATG-TC----C-ATGTA-TCCCA
* * * * * *
3228 TAAAGGTTACCTTTCATCCCATTCGTGTCGCAAATTTGAATGTAAATATACGCAAATAATGCTCG
627 TGAA-G----CTTT-A--CTA-T--T-TC-CAAAATTGCA---AACT-TACG---ATAA--AT--
* * * **** * *
3293 GGAAGACGTATTTTCGCGGATAAAAATAAATAA
668 --AA-A-ATA-ATACAAAAAGAAAAA-AAAGAA
* * * * * *** * * * * *** * * * * *
3326 AAACA-CGCT--AATAATGTCCATGTATACCATGAAGCTTTGCTATTTCGCAAAATTTCAAACTC
1 AAAGAGGGGTGCAA-CACGAGGA-CT-TCCCA-GGAGGTCACCCA--TC-C--TAGTAC-TACTC
* *** ** * * * ** *** ** *** *** ** *
3388 ACGATAAATAAAAAAATACAAAAAGAAAAAAAAATAAAAAAAGA-AGGGTGCATCACAAG-GACT
56 TCG-CCCA-AGCACACT--TAACTG---CGGAGTTCTGATGGGATCCGGTGCAT---TAGTG-C-
** * * * * * * ** **
3451 TCTCAA-GA-GGTCACCCATCCTAGTGCTACTCTTGCCCAAGCACACTTA-ACTACAGAGTTTTG
109 T-GGAATGATCG-CACCCAT--TA-TG-T--TC-TACGCAATC-TATTTACA-TA-A-AGGCTAC
* *** ** * * * * * * * * * * *
3513 ATAGGATCCGGTGT-GTTAGTGCTGGTATGATCG-CTCTCATTATGTTCTGCGC-AAT-CTGTTT
161 CTTTCATCCCAT-TCG-T-G-CCTCGAAT--TTGAATGT-A-AATATAC--C-CAAATAATG-CT
*** * * * * ** * * *
3574 ACATAAAGGC-TACCTTTCATCCCATTCGTGCCTCGAATTTGAATATAAATATAC-CTAAATAAT
214 -CGGGAAGACGTA--TTT--T--C--GCG-G-AT-AAAAAT-AAAATAAAAACACGCT-AATAAT
* * * * ** ** *** * *
3637 G-CACGGGAAGACGTATTTTCGCGGATAAAAATACAATAAAAACACGTTAATAATGTCCATGTAT
265 GTC-C------ATGTA---TC-C-CAT--GAA-GCTTTACTATTTCG-CAA-AAT-TGCA---A-
* * * * *** * * *
3701 CACATGAAGCATTACTATTTCTCAAAATTGCAGACTTACAATAAATAAAATAATACAAAAAGAAA
308 -AC-TTACG-ATAAATA-AAATAATA----CA-A---A-AA-GAA-AAAA-AA-AC---------
* * * *
3766 ATAAAGAAAAAGAGGGGTGCAACATGAGGACTTCTCAGGAGGTCACCCATCCTAGTACTACTTTC
347 ------AAAAAGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTC
* * * *
3831 GCCCAAGCACGCTTAACTACGGAGTTTTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCAC
406 GCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCAC
* * *
3896 CCATTATGTTCTAAGCAATCTATTTACATAAAGGCTA-CTTTCATCCCATTCGTGTCTCGAATTT
471 CCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCACGAATTT
* *
3960 GAATGTAAATATACCCAAATAATGCTCGAGAAGACGTATTTTCGCGGATAAAAATACAATAAAAA
536 GAATGTAAATATACCCAAATAATGCTCGAGAAGACATATTTTCGCGGATAAAAATAAAATAAAAA
* * * * * *
4025 CACGTTAATAATGTCCATGTATCACATGAAGCATTACTATTTCGCAAAATTGCAGACATACAATA
601 CACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTC-CAAAATTGCAAACTTACGATA
*
4090 AATAAAATAATACAAAAAGAAAATAAAGAA
665 AATAAAATAATACAAAAAGAAAAAAAAGAA
* * *
4120 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCAATCTTAGTACTACTCTCGCCCAAGT
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * *
4185 ACACTTAACTGTGGAGTTCTGATGGAATCCAGTGCATTAGTGCTGGTATGATCTCACCCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* *
4250 TTCTGCGCAATCTATTTACATAAAGGCTACCATTCATCCCATTCGTGCCTCGAATTTGAATGTAA
131 TTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* *
4315 GTATACCCAAATAATGCTCGAGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
196 ATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
* * *
4380 TAATGTCAATGTATCCCATCAAGCTTTACTATTTTCGCAATATTGCAAACTTACGATAAATAAAA
261 TAATGTCCATGTATCCCATGAAGCTTTACTA-TTTCGCAAAATTGCAAACTTACGATAAATAAAA
* * *
4445 TAATACAAAAAG--AAAAAAA-AAACA-A-------AACACGAGGACTTCGCAGGAGGTCACCCA
325 TAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
* ** * * **
4499 TCCTAGTGCTACTCTCGCCCAAGCACGGTTAGCTACAAAGTTCTGATGGGATCCGGTGCATTAGT
390 TCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
* * * * * *
4564 GCTGGTATGATCGCTCCCATTATGTTCTGCACAATCTGTTTACATAAAGGCTACCATTCATCTCA
455 GCTGGTATGATCGCACCCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCA
** * * * *
4629 TTCGTGCCTTGAATTTGAATGTAAATATACCTAAATAATGCTCGGGAAGACGTATTTTCGTGGAT
520 TTCGTGCCACGAATTTGAATGTAAATATACCCAAATAATGCTCGAGAAGACATATTTTCGCGGAT
* ** *
4694 AAAAATAAAATAAAAACACGTTAATAATGTCCATGTATCGTATGAAGCATTACTATTTCGCAAAA
585 AAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTC-CAAAA
** * * *
4759 TTGCAAACTTAAAATAAATAAAACAATACAAATAGAAAAAAAACAA
649 TTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAGAA
* * * * * * *
4805 AAAGTGGGATGCAACACGAGGACTTCCCAGAAGGTCACCTATCCTAGAACTACTCTCGCCCGAGA
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * ** *
4870 ACGCTTAACTGCGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATAACACCCTTTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* * *
4935 TTTTGCACAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
131 TTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
** *
5000 ATATACCC-AATAATGCTCATGAAGACGTATTTTTGCGGATAAAAATAAAATAAAAACACGCTAA
196 ATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
*
5064 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTCCAAACTTACGATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
* *
5129 AGTACGAAAAGAAAAAAATAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAATG-GGTCACCC
326 AATACAAAAAGAAAAAAA-AACAAAAAGAGGGGTGCAACACGAGGACTTCCCAA-GAGGTCACCC
** * * * **
5193 ATCCTAGTACTACTCTCGCCCAAGCATGCTTAACTTCGAAGTTTTGATGAAATCCGGTGCATTAG
389 ATCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
* * * * * ** * * *
5258 TGCCGTTATGATCGCAACCATTATATTATGTGCAATCTATTTACATAAAGTCTATCTTTTATCCC
454 TGCTGGTATGATCGCACCCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCC
* *
5323 ATTCGTGCCTA-GAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGG
519 ATTCGTGCC-ACGAATTTGAATGTAAATATACCCAAATAATGCTCGAGAAGACATATTTTCGCGG
*
5387 ATAAAAATAAAATAATAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAA
583 ATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTC-CAA
* * * *
5452 AATTCCAAACTTACGATAAATAAAATAGTACGAAAAGAAAAAAAAACAA
647 AATTGCAAACTTACGATAAATAAAATAATACAAAAAG-AAAAAAAAGAA
* * *
5501 AAAGAGGGGTGCAACACGAGGACTTCCCAAGG-GGTCACCCATCCTAGTACTACTTTCACACAAG
1 AAAGAGGGGTGCAACACGAGGACTTCCC-AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
* * * ** * ** *
5565 CACGCTTAACTTCGGAGTTTTGATGAAATTCGGTGCATTAGTGCTGTTATGATCGCAACCATTAT
65 CACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTAT
* * * * * * *
5630 ATTATGCACAATCTATTTACATAAAGTCTATCTTTCATCCCATTCGTGCCTCGAATTTAAATGTA
130 GTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTA
* * * * **
5695 AATATACCCAAATAATGCTCGCGAAGACATATTTTCACGGATAATAATAAAATAGTAACACGCTA
195 AATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTA
* * *
5760 ATAATGTCGATGTATCCCATGAAGCTTTACTATTTCGCAAAATCGCAAACTTACAATAAATAAAA
260 ATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAA
*
5825 TAATAC-AAAAGAAAAAAAAACAAAAAAAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
325 TAATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
* * * *
5889 TCTTAGTACAACTCTCGCCCAAGCACACTTAACTGCGAAGTTCTGATGGGATCCGGTGCAATAGT
390 TCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
* ** * * * *
5954 GCTGATATGATAACACCCATTATGTTTTGCACAATATATTTACATAAAGGCTACCTTTCATCCCA
455 GCTGGTATGATCGCACCCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCA
* * * * * * *
6019 TTCGTGCCTCGAATTTGAATGTAATTATACCAAAATAATGCCCGGGAAGACGTATTTTCGCGAAT
520 TTCGTGCCACGAATTTGAATGTAAATATACCCAAATAATGCTCGAGAAGACATATTTTCGCGGAT
* * * *
6084 AAAAATAAAATAAAAACACGATAATATTGTCCATGTATCCCATGAAGCTTTACAATTTCGCCAAA
585 AAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTC-CAAAA
*
6149 TTGCAAACTTACGATAAAT-AAATAATAC-AAAAGAAAAAAAAACAA
649 TTGCAAACTTACGATAAATAAAATAATACAAAAAG-AAAAAAAAGAA
* * * *
6194 AAAGAGGGGTGTAACACGAGGACTTCCCAGGAGGTCACCCATCTTAGTACTACTCTTGCCCAAGA
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * * * **
6259 ACACTTAACAGCGGAGTTCTGATGAGATTCGATGCAATAGTGCT-GATTTGATAACACCCATTAT
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGA-ATGATCGCACCCATTAT
* * * * * * *
6323 GTTTTGCACAATTTATTTACATAAAGTCTCCCTTTCATCCCATTCGTGCCTCGAATTGGAATGTA
130 GTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTA
* * * ** *
6388 AATATACCAAAATAATGCCCGAGAAGACGTATTTTCGCAAATAAAAATAAAATAAAAACACGATA
195 AATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTA
*
6453 ATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAGACTTACGATAAATAAAA
260 ATAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAA
** * * *
6518 TAATACAAGTAGAAAAAAAATACAAAAAGAAGGGTGCAACACGAGGACTTTCCAAGAGGTCACCA
325 TAATACAAAAAGAAAAAAAA-ACAAAAAGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCC
* * * *
6583 ATCCCAGTACTACTCTCGCCTAAGCACGCTTAACTGCGGAGTTCTGATGCGATCCGGTGCATTAG
389 ATCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
** * * *
6648 TGCTGGTATGATAACACCCATTATATTCTGCGCAATCTATTTACACAAAGGCTACCTTTCATCCC
454 TGCTGGTATGATCGCACCCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCC
** * * * * * * *** *
6713 ATTCGTGCGTCACCCATCCT-AATACT-ACTCT-CGCTCATGCACGCTTAACTGC-GGAGTCCAG
519 ATTCGTGC--CACGAAT-TTGAAT-GTAAATATAC-C-CA---A---ATAA-TGCTCGAGAAGAC
** * * * **** *** * *** ** * * * ***
6774 ATGAAATCCGATGCATTAGTGCTGGTATGATTGCA-GCCATTGTATTTTGCGCAATCTATTTATA
571 AT-ATTTTCG-CGGA-TAAAAATAAAATAAAAACACG-C-TAATAATGT-C-C-ATGTA-TCCCA
* * * * * * *
6838 TAAAGAC--TACCTTTCTTCC-CATTCGTGTCTCGAATTTGAATG-TAAATATACCCAAATAATG
627 TGAAG-CTTTA-CTAT-TTCCAAAAT--TG---CAAACTT--ACGAT-AA-ATA---AAATAAT-
* * * *
6899 CTCAGGAAGACGTATTTTTGCGGATAAAAATAA
676 -ACA--AA-A---A-------GAAAAAAAAGAA
* **** * * * *** * * * * * ** * * * *
6932 AATAAAAACATACTAATAATGTTCATGTATCTCATGAAGCTTTACTATATCGCAAAATTCCAAAC
1 AA-AGAGGGGTGC-AA-CACGAGGA-CT-TCCCA-GGAG-GTCAC-CCATC-C--TAGTAC-TAC
** ** * * **** * **** * *** * ** *
6997 T-TACG-ATAAATAAAATAATACAAAAAGAAAAAAGTAAAAAGA-GCGGTGCAACACGAGGACCT
54 TCT-CGCCCAAGCACACT--TA-ACTGCG-GAGTTCTGATGGGATCCGGTGCATTA-G-TG--CT
*** * *** * * ** * *** * ** ** *
7059 CCTAGGAGATCACCCATCCT-TGTACTACTCTAGCCCAAGCACGCTTAACTGC-AGAGTTCTGAT
110 GGAATGATCGCACCCAT--TATGTTCTACGC-AATCTATTTA--CATAAAGGCTA-CCTT-TCAT
*** * * * * * * * * *
7122 GAAATCTGGTGCAT-TAGTGCTGGTATGATCACACCCATTATATTCTGCGC-AATCGAT-TTACA
168 CCCAT-TCGTGCCTCGAAT--TTGAATG-T-A-A---A-TATA--C--C-CAAAT-AATGCT-CG
** * * *** * ** ** ** * * * *
7184 TAAAGGC-TAAATTTCATCTCATTTGTAATTTGAATGTAAGTATACCCAAATAATGCTCGGGAAG
216 GGAAGACGT--ATTT--TCGCGGAT-AAAAAT-AAAATAAAAACACGCTAATAATG-TC-----C
* * * ** ** * *** * ** * *
7248 ACGTATTTTCGCGGATAAAAATAAAATAAAAACATGCTAATAATGTTC-ATGTATCCCATAAAGC
269 ATGTA---TC-C-CATGAAGCTTTACT-ATTTC--GC-AA-AAT-TGCAAACT-TACGATAAA--
* * * * ******
7312 TTTACTATTTCAAAAAATTGCAAACTTACGATAAATAAAATAGTACGAAAATAAAAAAAAAACAA
320 --TA--A----AAT-AA-TACAAA---A--AGAAA-AAAA-A--AC--AAA-AAGAGGGGTGCAA
* * * * * * *
7377 AAAGAGGGGTGCAACACGAGGACTTCCCAGGCGATTACCCATCCTAGTACTACTCTCGTCCAAGC
363 CACGAGG--------------ACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * ** * * * *
7442 ACGCTTAACTACGGACTTTTGATGAAATCCGGTGCATTAGTGCTGGTATGCTCCCAGCCATTATA
414 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATTATG
** * * *
7507 TTCCGCGCAA-CTTATTTACATAAAAGCTACCTTTCATCCCATTCATGCCTCGAATTTGAATGTA
479 TTCTACGCAATC-TATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCACGAATTTGAATGTA
* * * * * *
7571 AATATACCCAAATAATGCTCGGGATGACGTATTTTCACGGATAAAAATAAAATAAAACCACGTTA
543 AATATACCCAAATAATGCTCGAGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGCTA
* * * *
7636 ATAATGTTCGTGTATCCTATGAAGCATTACTATTTCCAAAAATTGCAAACTTACGATAAATAAAA
608 ATAATGTCCATGTATCCCATGAAGCTTTACTATTTCC-AAAATTGCAAACTTACGATAAATAAAA
*
7701 TAATACAAAAAGAAAAAAAAAACAA
672 TAATACAAAAAG--AAAAAAAAGAA
* * * *
7726 AAAGAGGGGTGCAACACGAGGAATTCCCAAGAGGTCACCCATCCTAGTGCTACTCTTGCCCAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* ** ** * * * *
7791 ACGCTTTGCTGCAAAGTTCTGATGGGGTCCGGTGCATTAGTACTGGTATGATCGTACCCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
*
7856 TTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
131 TTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * * *
7921 ATATGCCCAAATAATGCTCAGGAAGACATATTTTCGCGGATAAAAATAAAATAAAAACACGTTAA
196 ATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
* * * *
7986 TAATGTCCATGTATCCTATGAAG-----C-ATTGCTCAAAATTGCAAACTTACAATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
* * * ** *
8045 AATGCAAAAAGAAAAAAAAAACATAAAGAAGGGTGCAACATTAGGACTTCCCAGGAGGTCACCCA
326 AATACAAAAAG-AAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCA
* * * * * *
8110 TCCTAATACTACTCTTGCACAAGCACGCTTAACTGCGAAGTTCTAATGGGATCCGGTGCATTAGT
390 TCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
* * * * * * *
8175 GCTAGTATGATCACACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTGTCCTCGCA
455 GCTGGTATGATCGCACCCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCA
* * * **
8240 TTCGTGCCACGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGGCGTATTTTCGCAAAT
520 TTCGTGCCACGAATTTGAATGTAAATATACCCAAATAATGCTCGAGAAGACATATTTTCGCGGAT
** * * *
8305 AAAAATAAAATAAAAACACGCTAATAAAATCCATGTAGCCCATGCAGCTTTACTTTTTCGCAAAA
585 AAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTC-CAAAA
* *
8370 TTGCAAACTTATGATAAATAAAATAATACAAAAAGAAAAAAAACAA
649 TTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAGAA
* * * * * * *
8416 AAAGAGGAGTGCAATACGAGGACTTCCAAAGAGGTCACCCATCCTAATACTACTCTCGCCGAAGA
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * * *
8481 ACGCTTAGCTGCGGAGTTCTGATGAGATCTGATGCATTAGTGCTGGAATGATCGTACCCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* * * *
8546 TTCTGCGCAATCTATTTACATAAAGGATACCTTTCATCTCATTCGTGCATCGAATTTGAATGTAA
131 TTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* *
8611 ATATACCCAAATAATGCTCGGAAAGACGTATTTTCGAGGATAAAAATAAAATAAAAACACGCTAA
196 ATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
* *
8676 TAATGTCCATGTATCCCATGAATCTTTACTATTTCGCAAAATTGCAAACATACGATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
* * * * *
8741 AATACAAAAAGAAAAAAAAACAAAAAGTGCGGTGCAACATGAGGACTTCCCAGGAGGACACCCAT
326 AATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCAT
* * * **
8806 CCTAGTACAACTCCCGCCCAAGCACGCTTAAAAGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
391 CCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
* * * * *
8871 CTGGTATGGTCGCACCCATTATGTTCTGCACAATCTGTTTACATAAAGGATACCTTTCATCCCAT
456 CTGGTATGATCGCACCCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCAT
* * * * * *
8936 TCGTGCCTCGAGTTTGAAAGTAAATATACCCAAATAATGCTCGGGAAGACGTATTTTCGTGGATA
521 TCGTGCCACGAATTTGAATGTAAATATACCCAAATAATGCTCGAGAAGACATATTTTCGCGGATA
* * *
9001 AAAATAAAGTAAAAACATGCTAATAATGTCCATGTATCCCATGAAACTTTACTATTTCGCAAAAT
586 AAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTC-CAAAAT
* * *
9066 TCCAAACTTACGATAAATAAAATAGTAC------AAAAAAAACAA
650 TGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAGAA
*
9105 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATACTAGTACTACTCTCGCCCAAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * *
9170 ACGC-TAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGGTCGCACCCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* * * *
9234 TTCTACACAATCTATTTACATAAAGGCTACCTTTCAT--CA--CATGCCTCGAGTTTGAAAGTAA
131 TTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* * * *
9295 ATATACCCAAATAATGCTCAGGAAGACGTATTTTCGCGGATAAAAATAAAGTAAAATCATGCTAA
196 ATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
9360 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
*
9425 AATAC----AG-AAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTT-CCAAGGAAGTCACCCA
326 AATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAA-GAGGTCACCCA
* * * *
9484 TACTAGTACTACTCTCGCCCAAGCACGCTAAACTGCGGAGTTCTGATGGGATTCGGTGCATTAGT
390 TCCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
* ** * *
9549 GCTGGTATGATCGCACTCATTATGTTCTGGGCAATCTAATTACATAAAGGCTACCTTTGATCCCA
455 GCTGGTATGATCGCACCCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCA
* * ** **
9614 TTCGTGCCTCGAATTTGAATGTAAGTATA-CCAAATAATGCTCGAGAAGATGTATTTTCGAAGAT
520 TTCGTGCCACGAATTTGAATGTAAATATACCCAAATAATGCTCGAGAAGACATATTTTCGCGGAT
* *
9678 AAAAATAAAATAAAAAGACGCTAATAATGTCCATGTATCCCTTGAAGCTTTACTATTTCACAAAA
585 AAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTC-CAAAA
* * * *
9743 TTACAAACTTACGATAAATAAAATAATTCACAAAGAAAAAAAAACAA
649 TTGCAAACTTACGATAAATAAAATAATACAAAAAG-AAAAAAAAGAA
* * * * *
9790 AAAGAAGGGTGCAACACGAGGATTTCCCAGGAGGTCACCCATCCTAGTGCTATTCTCGCCCGAGC
1 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * * *
9855 GCGCTTAACTACGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGAATGTTCGCACCCATTATG
66 ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
* * *
9920 TTCTGCGCAATCTATTTACATAAAGGCTACCTGTCAACCCATTCGTGCCTCGAATTTGAATGTAA
131 TTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
* *
9985 ATATACTCAAATAATGCTCTGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
196 ATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
* *
10050 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCACAAAATTACAAACTTACGATAAATAAAAT
261 TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
* * * *
10115 AATTCACAAAGAAAAAAAAACAAAAAGAAGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
326 AATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCAT
* * * * * *
10180 CCTAGTGCTACTCTCGCCCGAGCGCGCTTAACTACGGAGTTCTGATGGGATCCGATGCATTAGTG
391 CCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
* * *
10245 CTGGAATGAT-GTCACCAATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTTTCATCCCA
456 CTGGTATGATCG-CACCCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCA
10309 GGAGGTCACC
Statistics
Matches: 7252, Mismatches: 1419, Indels: 888
0.76 0.15 0.09
Matches are distributed among these distances:
678 119 0.02
679 183 0.03
680 2 0.00
683 41 0.01
684 359 0.05
685 431 0.06
686 93 0.01
687 4 0.00
688 90 0.01
689 72 0.01
690 411 0.06
691 1 0.00
692 274 0.04
693 341 0.05
694 617 0.09
695 1657 0.23
696 243 0.03
697 127 0.02
698 39 0.01
699 92 0.01
700 503 0.07
701 3 0.00
702 5 0.00
703 5 0.00
704 15 0.00
705 7 0.00
706 14 0.00
707 11 0.00
708 9 0.00
709 6 0.00
710 11 0.00
711 10 0.00
712 14 0.00
713 9 0.00
714 3 0.00
715 5 0.00
716 6 0.00
717 7 0.00
718 9 0.00
719 7 0.00
721 1 0.00
722 2 0.00
723 19 0.00
724 5 0.00
725 6 0.00
726 5 0.00
727 3 0.00
728 3 0.00
729 10 0.00
730 9 0.00
731 5 0.00
732 5 0.00
733 6 0.00
734 6 0.00
735 2 0.00
736 7 0.00
737 10 0.00
738 26 0.00
739 12 0.00
740 2 0.00
741 12 0.00
742 3 0.00
743 6 0.00
744 6 0.00
745 8 0.00
746 8 0.00
747 21 0.00
748 6 0.00
749 13 0.00
750 5 0.00
751 13 0.00
752 32 0.00
753 12 0.00
754 8 0.00
755 10 0.00
756 18 0.00
757 20 0.00
758 18 0.00
759 8 0.00
760 10 0.00
761 12 0.00
762 20 0.00
763 15 0.00
764 7 0.00
765 12 0.00
766 6 0.00
767 11 0.00
768 7 0.00
769 13 0.00
770 21 0.00
771 12 0.00
772 11 0.00
773 9 0.00
774 19 0.00
775 19 0.00
776 17 0.00
777 11 0.00
778 8 0.00
779 11 0.00
780 27 0.00
781 11 0.00
782 5 0.00
783 12 0.00
785 11 0.00
786 25 0.00
787 9 0.00
788 5 0.00
789 6 0.00
790 2 0.00
791 12 0.00
792 9 0.00
793 10 0.00
794 25 0.00
795 14 0.00
796 10 0.00
797 14 0.00
798 2 0.00
799 3 0.00
800 7 0.00
801 4 0.00
802 5 0.00
803 5 0.00
804 4 0.00
805 2 0.00
806 1 0.00
807 12 0.00
808 5 0.00
809 7 0.00
810 8 0.00
811 18 0.00
812 2 0.00
813 5 0.00
814 5 0.00
815 8 0.00
816 9 0.00
817 14 0.00
818 10 0.00
819 5 0.00
820 16 0.00
821 9 0.00
822 11 0.00
823 12 0.00
824 10 0.00
825 8 0.00
828 9 0.00
829 4 0.00
830 5 0.00
831 6 0.00
832 13 0.00
833 7 0.00
834 137 0.02
835 1 0.00
837 22 0.00
838 154 0.02
839 3 0.00
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.27
Consensus pattern (694 bp):
AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
ACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGAATGATCGCACCCATTATG
TTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAA
ATATACCCAAATAATGCTCGGGAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAA
TAATGTCCATGTATCCCATGAAGCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAAT
AATACAAAAAGAAAAAAAAACAAAAAGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCAT
CCTAGTACTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTG
CTGGTATGATCGCACCCATTATGTTCTACGCAATCTATTTACATAAAGGCTACCTTTCATCCCAT
TCGTGCCACGAATTTGAATGTAAATATACCCAAATAATGCTCGAGAAGACATATTTTCGCGGATA
AAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATTTCCAAAATT
GCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAGAA
Found at i:3223 original size:142 final size:142
Alignment explanation
Indices: 2967--3248 Score: 399
Period size: 142 Copynumber: 2.0 Consensus size: 142
2957 ACTTCCAAGT
* *
2967 AGGTCACCCATCCTAGTGCTATTCTCGCCCAGGCACGCTTAACTACGGAGTTCTGAAGGGATCCG
1 AGGTCACCCATCCTAGTGCTATTCTCGCCCAAGCACGCTTAACTACAGAGTTCTGAAGGGATCCG
* * **
3032 ATGCATTAGTGCTAGAATGATCTCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACC
66 ATGCATCAGTGCTAGAATGATCGCACCCATTATGTTCTAAGCAATCTATTTACATAAAGGCTACC
3097 TTTCATCCCAGG
131 TTTCATCCCAGG
* * *
3109 AGGTCACCCATCCTAGTAG-TACTT-TTGCCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATC
1 AGGTCACCCATCCTAGT-GCTA-TTCTCGCCCAAGCACGCTTAACTACAGAGTTCTGAAGGGATC
* * * *
3172 CGATGCATCAGTGCTGGTATGATCGCA-CCATTTTTGTTCTAAGCAATCTATTTACATAAAGGTT
64 CGATGCATCAGTGCTAGAATGATCGCACCCA-TTATGTTCTAAGCAATCTATTTACATAAAGGCT
3236 ACCTTTCATCCCA
128 ACCTTTCATCCCA
3249 TTCGTGTCGC
Statistics
Matches: 124, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
141 3 0.02
142 118 0.95
143 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (142 bp):
AGGTCACCCATCCTAGTGCTATTCTCGCCCAAGCACGCTTAACTACAGAGTTCTGAAGGGATCCG
ATGCATCAGTGCTAGAATGATCGCACCCATTATGTTCTAAGCAATCTATTTACATAAAGGCTACC
TTTCATCCCAGG
Found at i:3420 original size:18 final size:18
Alignment explanation
Indices: 3397--3432 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
3387 CACGATAAAT
*
3397 AAAAAAATACAAAAAGAA
1 AAAAAAATAAAAAAAGAA
3415 AAAAAAATAAAAAAAGAA
1 AAAAAAATAAAAAAAGAA
3433 GGGTGCATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.86, C:0.03, G:0.06, T:0.06
Consensus pattern (18 bp):
AAAAAAATAAAAAAAGAA
Found at i:3777 original size:15 final size:16
Alignment explanation
Indices: 3737--3778 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
3727 ATTGCAGACT
*
3737 TACAATAAATAAAATAA
1 TACAA-AAAGAAAATAA
3754 TACAAAAAGAAAATAA
1 TACAAAAAGAAAATAA
*
3770 -AGAAAAAGA
1 TACAAAAAGA
3779 GGGGTGCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 8 0.35
16 10 0.43
17 5 0.22
ACGTcount: A:0.74, C:0.05, G:0.07, T:0.14
Consensus pattern (16 bp):
TACAAAAAGAAAATAA
Found at i:4015 original size:346 final size:348
Alignment explanation
Indices: 3102--6720 Score: 4843
Period size: 346 Copynumber: 10.4 Consensus size: 348
3092 CTACCTTTCA
* * * *
3102 TCCCAGGAGGTCACCCATCCTAGTAGTACTTTTGCCCAAGCACGCTTAACTGCAGAGTTCTGATG
1 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* * * *
3167 GGATCCGATGCATCAGTGCTGGTATGATCGCA-CCATTTTTGTTCTAAGCAATCTATTTACATAA
66 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCA-TTATGTTCTCAGCAATCTATTTACATAA
* * * * *
3231 AGGTTACCTTTCATCCCATTCGTGTCGCAAATTTGAATGTAAATATACGCAAATAATGCTCGGGA
130 AGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGA
*
3296 AGACGTATTTTCGCGGATAAAAAT-AAATAAAAACACGCTAATAATGTCCATGTATACCATGAAG
195 AGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAG
* * * * *
3360 CTTTGCTATTTCGCAAAATTTCAAACTCACGATAAATAAAAAAATACAAAAAGAAAAAAAAATAA
260 CTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAG-AAAAAAAA-AC
* * *
3425 AAAAAGAAGGGTGCATCACAAGGACT
323 AAAAAGAGGGGTGCAACACGAGGACT
* * * * * * * * *
3451 TCTCAAGAGGTCACCCATCCTAGTGCTACTCTTGCCCAAGCACACTTAACTACAGAGTTTTGATA
1 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
** * * *
3516 GGATCCGGTGTGTTAGTGCTGGTATGATCGCTCTCATTATGTTCTGC-GCAATCTGTTTACATAA
66 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATTATGTTCT-CAGCAATCTATTTACATAA
* * *
3580 AGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATATAAATATACCTAAATAATGCACGGGA
130 AGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGA
* * *
3645 AGACGTATTTTCGCGGATAAAAATACAATAAAAACACGTTAATAATGTCCATGTATCACATGAAG
195 AGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAG
* * * * * *
3710 CATTACTATTTCTCAAAATTGCAGACTTACAATAAATAAAATAATACAAAAAG-AAAATAAAGAA
260 CTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAA
*
3774 AAAGAGGGGTGCAACATGAGGACT
325 AAAGAGGGGTGCAACACGAGGACT
* * * *
3798 TCTCAGGAGGTCACCCATCCTAGTACTACTTTCGCCCAAGCACGCTTAACTACGGAGTTTTGATG
1 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* *
3863 GGATCCGATGCATTAGTGCTGGTATGATCGCACCCATTATGTTCTAAGCAATCTATTTACATAAA
66 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATTATGTTCTCAGCAATCTATTTACATAAA
* *
3928 GGCTA-CTTTCATCCCATTCGTGTCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGAGAA
131 GGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAA
* * *
3992 GACGTATTTTCGCGGATAAAAATACAATAAAAACACGTTAATAATGTCCATGTATCACATGAAGC
196 GACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGC
* * * * * *
4057 ATTACTATTTCGCAAAATTGCAGACATACAATAAATAAAATAATACAAAAAG-AAAATAAAGAAA
261 TTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAA
4121 AAGAGGGGTGCAACACGAGGACT
326 AAGAGGGGTGCAACACGAGGACT
* * * * *
4144 TCCCAGGAGGTCACCAATCTTAGTACTACTCTCGCCCAAGTACACTTAACTGTGGAGTTCTGATG
1 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* * *
4209 GAATCCAGTGCATTAGTGCTGGTATGATCTCACCCATTATGTTCTGC-GCAATCTATTTACATAA
66 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATTATGTTCT-CAGCAATCTATTTACATAA
* * *
4273 AGGCTACCATTCATCCCATTCGTGCCTCGAATTTGAATGTAAGTATACCCAAATAATGCTCGAGA
130 AGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGA
* *
4338 AGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCAATGTATCCCATCAAG
195 AGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAG
*
4403 CTTTACTATTTTCGCAATATTGCAAACTTACGATAAATAAAATAATACAAAAAG--AAAAAAA-A
260 CTTTACTA-TTTCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACA
*
4465 AACA-A-------AACACGAGGACT
324 AAAAGAGGGGTGCAACACGAGGACT
* * * * * **
4482 TCGCAGGAGGTCACCCATCCTAGTGCTACTCTCGCCCAAGCACGGTTAGCTACAAAGTTCTGATG
1 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* *
4547 GGATCCGGTGCATTAGTGCTGGTATGATCGCTCCCATTATGTTCTGCA-CAATCTGTTTACATAA
66 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATTATGTTCT-CAGCAATCTATTTACATAA
* * * *
4611 AGGCTACCATTCATCTCATTCGTGCCTTGAATTTGAATGTAAATATACCTAAATAATGCTCGGGA
130 AGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGA
* * **
4676 AGACGTATTTTCGTGGATAAAAATAAAATAAAAACACGTTAATAATGTCCATGTATCGTATGAAG
195 AGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAG
* ** * *
4741 CATTACTATTTCGCAAAATTGCAAACTTAAAATAAATAAAACAATACAAATAG-AAAAAAAACAA
260 CTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAA
* *
4805 AAAGTGGGATGCAACACGAGGACT
325 AAAGAGGGGTGCAACACGAGGACT
* * * * *
4829 TCCCAGAAGGTCACCTATCCTAGAACTACTCTCGCCCGAGAACGCTTAACTGCGGAGTTCTGATG
1 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* ** * *
4894 GGATCCGATGCATTAGTGCTGGTATGATAACACCCTTTATGTTTTGCA-CAATCTATTTACATAA
66 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATTATGTTCT-CAGCAATCTATTTACATAA
**
4958 AGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCC-AATAATGCTCATGA
130 AGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGA
*
5022 AGACGTATTTTTGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAG
195 AGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAG
* * *
5087 CTTTACTATTTCGCAAAATTCCAAACTTACGATAAATAAAATAGTACGAAAAGAAAAAAATAACA
260 CTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAA-AACA
5152 AAAAGAGGGGTGCAACACGAGGACT
324 AAAAGAGGGGTGCAACACGAGGACT
* * * * *
5177 TCCCAATG-GGTCACCCATCCTAGTACTACTCTCGCCCAAGCATGCTTAACTTCGAAGTTTTGAT
1 TCCC-AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGAT
** * * * * * **
5241 GAAATCCGGTGCATTAGTGCCGTTATGATCGCAACCATTATATTATGTGCAATCTATTTACATAA
65 GGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATTATGTTCTCAGCAATCTATTTACATAA
* * * *
5306 AGTCTATCTTTTATCCCATTCGTGCCTAGAATTTGAATGTAAATATACCCAAATAATGCTCGGGA
130 AGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGA
*
5371 AGACGTATTTTCGCGGATAAAAATAAAATAATAACACGCTAATAATGTCCATGTATCCCATGAAG
195 AGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAG
* * *
5436 CTTTACTATTTCGCAAAATTCCAAACTTACGATAAATAAAATAGTACGAAAAGAAAAAAAAACAA
260 CTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAA
5501 AAAGAGGGGTGCAACACGAGGACT
325 AAAGAGGGGTGCAACACGAGGACT
* * * * *
5525 TCCCAAGG-GGTCACCCATCCTAGTACTACTTTCACACAAGCACGCTTAACTTCGGAGTTTTGAT
1 TCCC-AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGAT
** * * * * *
5589 GAAATTCGGTGCATTAGTGCTGTTATGATCGCAACCATTATATTATGCA-CAATCTATTTACATA
65 GGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATTATGTTCT-CAGCAATCTATTTACATA
* * * *
5653 AAGTCTATCTTTCATCCCATTCGTGCCTCGAATTTAAATGTAAATATACCCAAATAATGCTCGCG
129 AAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGG
* * * ** *
5718 AAGACATATTTTCACGGATAATAATAAAATAGTAACACGCTAATAATGTCGATGTATCCCATGAA
194 AAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAA
* *
5783 GCTTTACTATTTCGCAAAATCGCAAACTTACAATAAATAAAATAATAC-AAAAGAAAAAAAAACA
259 GCTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACA
*
5847 AAAAAAGGGGTGCAACACGAGGACT
324 AAAAGAGGGGTGCAACACGAGGACT
* * * * *
5872 TCCCAAGAGGTCACCCATCTTAGTACAACTCTCGCCCAAGCACACTTAACTGCGAAGTTCTGATG
1 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* * ** * *
5937 GGATCCGGTGCAATAGTGCTGATATGATAACACCCATTATGTTTTGCA-CAATATATTTACATAA
66 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATTATGTTCT-CAGCAATCTATTTACATAA
* * *
6001 AGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAATTATACCAAAATAATGCCCGGGA
130 AGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGA
* * *
6066 AGACGTATTTTCGCGAATAAAAATAAAATAAAAACACGATAATATTGTCCATGTATCCCATGAAG
195 AGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAG
* *
6131 CTTTACAATTTCGCCAAATTGCAAACTTACGATAAAT-AAATAATAC-AAAAGAAAAAAAAACAA
260 CTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAA
*
6194 AAAGAGGGGTGTAACACGAGGACT
325 AAAGAGGGGTGCAACACGAGGACT
* * * * *
6218 TCCCAGGAGGTCACCCATCTTAGTACTACTCTTGCCCAAGAACACTTAACAGCGGAGTTCTGATG
1 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* * * * * * ** * *
6283 AGATTCGATGCAATAGTGCTGATTTGATAACACCCATTATGTTTTGCA-CAATTTATTTACATAA
66 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATTATGTTCT-CAGCAATCTATTTACATAA
* * * * * *
6347 AGTCTCCCTTTCATCCCATTCGTGCCTCGAATTGGAATGTAAATATACCAAAATAATGCCCGAGA
130 AGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGA
** *
6412 AGACGTATTTTCGCAAATAAAAATAAAATAAAAACACGATAATAATGTCCATGTATCCCATGAAG
195 AGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAG
* **
6477 CTTTACTATTTCGCAAAATTGCAGACTTACGATAAATAAAATAATACAAGTAGAAAAAAAATACA
260 CTTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAA-ACA
*
6542 AAAAGAAGGGTGCAACACGAGGACT
324 AAAAGAGGGGTGCAACACGAGGACT
* * * * *
6567 TTCCAAGAGGTCACCAATCCCAGTACTACTCTCGCCTAAGCACGCTTAACTGCGGAGTTCTGATG
1 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* ** * *
6632 CGATCCGGTGCATTAGTGCTGGTATGATAACACCCATTATATTCTGC-GCAATCTATTTACACAA
66 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATTATGTTCT-CAGCAATCTATTTACATAA
6696 AGGCTACCTTTCATCCCATTCGTGC
130 AGGCTACCTTTCATCCCATTCGTGC
6721 GTCACCCATC
Statistics
Matches: 2925, Mismatches: 316, Indels: 58
0.89 0.10 0.02
Matches are distributed among these distances:
337 40 0.01
338 256 0.09
339 4 0.00
345 1 0.00
346 769 0.26
347 746 0.26
348 545 0.19
349 481 0.16
350 83 0.03
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (348 bp):
TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATTATGTTCTCAGCAATCTATTTACATAAA
GGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAA
GACGTATTTTCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGC
TTTACTATTTCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAA
AAGAGGGGTGCAACACGAGGACT
Found at i:4123 original size:15 final size:16
Alignment explanation
Indices: 4082--4124 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
4072 AATTGCAGAC
*
4082 ATACAATAAATAAAATA
1 ATACAA-AAAGAAAATA
4099 ATACAAAAAGAAAATA
1 ATACAAAAAGAAAATA
*
4115 A-AGAAAAAGA
1 ATACAAAAAGA
4125 GGGGTGCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 8 0.33
16 10 0.42
17 6 0.25
ACGTcount: A:0.74, C:0.05, G:0.07, T:0.14
Consensus pattern (16 bp):
ATACAAAAAGAAAATA
Found at i:6848 original size:145 final size:145
Alignment explanation
Indices: 6576--6864 Score: 400
Period size: 145 Copynumber: 2.0 Consensus size: 145
6566 TTTCCAAGAG
* * * ** *
6576 GTCACCAATCCCAGTACTACTCTCGCCTAAGCACGCTTAACTGCGGAGTTCTGATGCGATCCGGT
1 GTCACCAATCCCAATACTACTCTCGCCTAAGCACGCTTAACTGCGGAGTCCAGATGAAATCCGAT
*
6641 GCATTAGTGCTGGTATGATAACACCCATTATATTCTGCGCAATCTATTTACACAAAGGCTACCTT
66 GCATTAGTGCTGGTATGATAACACCCATTATATTCTGCGCAATCTATTTACACAAAGACTACCTT
6706 TCATCCCATTCGTGC
131 TCATCCCATTCGTGC
* * *
6721 GTCACCCATCCTAATACTACTCTCG-CTCATGCACGCTTAACTGCGGAGTCCAGATGAAATCCGA
1 GTCACCAATCCCAATACTACTCTCGCCT-AAGCACGCTTAACTGCGGAGTCCAGATGAAATCCGA
** * * * * *
6785 TGCATTAGTGCTGGTATGATTGCAGCCATTGTATTTTGCGCAATCTATTTATATAAAGACTACCT
65 TGCATTAGTGCTGGTATGATAACACCCATTATATTCTGCGCAATCTATTTACACAAAGACTACCT
*
6850 TTCTTCCCATTCGTG
130 TTCATCCCATTCGTG
6865 TCTCGAATTT
Statistics
Matches: 125, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
144 2 0.02
145 123 0.98
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (145 bp):
GTCACCAATCCCAATACTACTCTCGCCTAAGCACGCTTAACTGCGGAGTCCAGATGAAATCCGAT
GCATTAGTGCTGGTATGATAACACCCATTATATTCTGCGCAATCTATTTACACAAAGACTACCTT
TCATCCCATTCGTGC
Found at i:8591 original size:347 final size:347
Alignment explanation
Indices: 6721--10308 Score: 4874
Period size: 348 Copynumber: 10.4 Consensus size: 347
6711 CCATTCGTGC
* * * * * ** *
6721 GTCACCCATCCTAATACTACTCTCGCTCATGCACGCTTAACTGCGGAGTCCAGATGAAATCCGAT
1 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * * * * *
6786 GCATTAGTGCTGGTATGATTGCAGCCATTGTATTTTGCGCAATCTATTTATATAAAGACTACCTT
66 GCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTT
* * *
6851 TCTTCCCATTCGTGTCTCGAATTTGAATGTAAATATACCCAAATAATGCTCAGGAAGACGTATTT
131 TCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTT
* ** * * *
6916 TTGCGGATAAAAATAAAATAAAAACATACTAATAATGTTCATGTATCTCATGAAGCTTTACTATA
196 TCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATT
* **
6981 TCGCAAAATTCCAAACTTACGATAAATAAAATAATACAAAAAG--AAAAAAGTAAAAAGAGCGGT
261 TCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAGAG-GGT
* *
7044 GCAACACGAGGACCTCCTAGGAG
325 GCAACACGAGGACTTCCCAGGAG
* * * * ** *
7067 ATCACCCATCCTTGTACTACTCTAGCCCAAGCACGCTTAACTGCAGAGTTCTGATGAAATCTGGT
1 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * **
7132 GCATTAGTGCTGGTATGATCACACCCATTATATTCTGCGCAATCGATTTACATAAAGGCTAAATT
66 GCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTT
* *
7197 TCATCTCATT--TG--T--AATTTGAATGTAAGTATACCCAAATAATGCTCGGGAAGACGTATTT
131 TCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTT
* * *
7256 TCGCGGATAAAAATAAAATAAAAACATGCTAATAATGTTCATGTATCCCATAAAGCTTTACTATT
196 TCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATT
** *
7321 TCAAAAAATTGCAAACTTACGATAAATAAAATAGTACGAAAATA-AAAAAAAAACAAAAAGAGGG
261 TCGCAAAATTGCAAACTTACGATAAATAAAATAATAC-AAAA-AGAAAAAAAAACAAAAAGA-GG
*
7385 GTGCAACACGAGGACTTCCCAGGCG
323 GTGCAACACGAGGACTTCCCAGGAG
* * * * * * **
7410 ATTACCCATCCTAGTACTACTCTCGTCCAAGCACGCTTAACTACGGACTTTTGATGAAATCCGGT
1 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * * * *
7475 GCATTAGTGCTGGTATGCTCCCAGCCATTATATTCCGCGCAA-CTTATTTACATAAAAGCTACCT
66 GCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATC-TATTTACATAAAGGCTACCT
* *
7539 TTCATCCCATTCATGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGATGACGTATT
130 TTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATT
* * * * * * *
7604 TTCACGGATAAAAATAAAATAAAACCACGTTAATAATGTTCGTGTATCCTATGAAGCATTACTAT
195 TTCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTAT
7669 TTC-CAAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAAACAAAAAGAGG
260 TTCGC-AAAATTGCAAACTTACGATAAATAAAATAATACAAAAAG-AAAAAAAAACAAAAAGA-G
* *
7733 GGTGCAACACGAGGAATTCCCAAGAG
322 GGTGCAACACGAGGACTTCCCAGGAG
* * ** ** *
7759 GTCACCCATCCTAGTGCTACTCTTGCCCAAGCACGCTTTGCTGCAAAGTTCTGATGGGGTCCGGT
1 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* *
7824 GCATTAGTACTGGTATGATCGTACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTT
66 GCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTT
* * *
7889 TCATCCCATTCGTGCCTCGAATTTGAATGTAAATATGCCCAAATAATGCTCAGGAAGACATATTT
131 TCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTT
* *
7954 TCGCGGATAAAAATAAAATAAAAACACGTTAATAATGTCCATGTATCCTATGAAG-----C-ATT
196 TCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATT
* * * * *
8013 GCTCAAAATTGCAAACTTACAATAAATAAAATAATGCAAAAAGAAAAAAAAAACATAAAGAAGGG
261 TCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAG-AAAAAAAAACAAAAAG-AGGG
**
8078 TGCAACATTAGGACTTCCCAGGAG
324 TGCAACACGAGGACTTCCCAGGAG
* * * * *
8102 GTCACCCATCCTAATACTACTCTTGCACAAGCACGCTTAACTGCGAAGTTCTAATGGGATCCGGT
1 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * *
8167 GCATTAGTGCTAGTATGATCACACCCATTATGTTTTGCGCAATCTATTTACATAAAGGCTACCTG
66 GCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTT
* * * *
8232 TCCTCGCATTCGTGCCACGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGGCGTATTT
131 TCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTT
** ** * * *
8297 TCGCAAATAAAAATAAAATAAAAACACGCTAATAAAATCCATGTAGCCCATGCAGCTTTACTTTT
196 TCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATT
*
8362 TCGCAAAATTGCAAACTTATGATAAATAAAATAATACAAAAAG-AAAAAAAACAAAAAGAGGAGT
261 TCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAGAGG-GT
* * *
8426 GCAATACGAGGACTTCCAAAGAG
325 GCAACACGAGGACTTCCCAGGAG
* * * * * * *
8449 GTCACCCATCCTAATACTACTCTCGCCGAAGAACGCTTAGCTGCGGAGTTCTGATGAGATCTGAT
1 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * *
8514 GCATTAGTGCTGGAATGATCGTACCCATTATGTTCTGCGCAATCTATTTACATAAAGGATACCTT
66 GCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTT
* * *
8579 TCATCTCATTCGTGCATCGAATTTGAATGTAAATATACCCAAATAATGCTCGGAAAGACGTATTT
131 TCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTT
* *
8644 TCGAGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAATCTTTACTATT
196 TCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATT
* *
8709 TCGCAAAATTGCAAACATACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAGTGCGGT
261 TCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAGAG-GGT
*
8774 GCAACATGAGGACTTCCCAGGAG
325 GCAACACGAGGACTTCCCAGGAG
* * * **
8797 GACACCCATCCTAGTACAACTCCCGCCCAAGCACGCTTAAAAGCGGAGTTCTGATGGGATCCGGT
1 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * *
8862 GCATTAGTGCTGGTATGGTCGCACCCATTATGTTCTGCACAATCTGTTTACATAAAGGATACCTT
66 GCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTT
* *
8927 TCATCCCATTCGTGCCTCGAGTTTGAAAGTAAATATACCCAAATAATGCTCGGGAAGACGTATTT
131 TCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTT
* * * *
8992 TCGTGGATAAAAATAAAGTAAAAACATGCTAATAATGTCCATGTATCCCATGAAACTTTACTATT
196 TCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATT
* *
9057 TCGCAAAATTCCAAACTTACGATAAATAAAATAGTAC-------AAAAAAAACAAAAAGAGGGGT
261 TCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAGA-GGGT
9115 GCAACACGAGGACTTCCCAGGAG
325 GCAACACGAGGACTTCCCAGGAG
*
9138 GTCACCCATACTAGTACTACTCTCGCCCAAGCACGC-TAACTGCGGAGTTCTGATGGGATCCGGT
1 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * *
9202 GCATTAGTGCTGGTATGGTCGCACCCATTATGTTCTACACAATCTATTTACATAAAGGCTACCTT
66 GCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTT
* * * *
9267 TCAT--CA--CATGCCTCGAGTTTGAAAGTAAATATACCCAAATAATGCTCAGGAAGACGTATTT
131 TCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTT
* * *
9328 TCGCGGATAAAAATAAAGTAAAATCATGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATT
196 TCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATT
9393 TCGCAAAATTGCAAACTTACGATAAATAAAATAATAC----AG-AAAAAAAACAAAAAGAGGGGT
261 TCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAGA-GGGT
* *
9453 GCAACACGAGGACTTCCAAGGAA
325 GCAACACGAGGACTTCCCAGGAG
* * *
9476 GTCACCCATACTAGTACTACTCTCGCCCAAGCACGCTAAACTGCGGAGTTCTGATGGGATTCGGT
1 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * *
9541 GCATTAGTGCTGGTATGATCGCACTCATTATGTTCTGGGCAATCTAATTACATAAAGGCTACCTT
66 GCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTT
* * * *
9606 TGATCCCATTCGTGCCTCGAATTTGAATGTAAGTATA-CCAAATAATGCTCGAGAAGATGTATTT
131 TCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTT
** * *
9670 TCGAAGATAAAAATAAAATAAAAAGACGCTAATAATGTCCATGTATCCCTTGAAGCTTTACTATT
196 TCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATT
* * * *
9735 TCACAAAATTACAAACTTACGATAAATAAAATAATTCACAAAGAAAAAAAAACAAAAAGAAGGGT
261 TCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAG-AGGGT
*
9800 GCAACACGAGGATTTCCCAGGAG
325 GCAACACGAGGACTTCCCAGGAG
* * * * * *
9823 GTCACCCATCCTAGTGCTATTCTCGCCCGAGCGCGCTTAACTACGGAGTTCTGATGGGATCCGAT
1 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * *
9888 GCATTAGTGCTGGAATGTTCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTG
66 GCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTT
* * *
9953 TCAACCCATTCGTGCCTCGAATTTGAATGTAAATATACTCAAATAATGCTCTGGAAGACGTATTT
131 TCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTT
10018 TCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATT
196 TCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATT
* * * *
10083 TCACAAAATTACAAACTTACGATAAATAAAATAATTCACAAAGAAAAAAAAACAAAAAGAAGGGT
261 TCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAG-AGGGT
10148 GCAACACGAGGACTTCCCAGGAG
325 GCAACACGAGGACTTCCCAGGAG
* * * * *
10171 GTCACCCATCCTAGTGCTACTCTCGCCCGAGCGCGCTTAACTACGGAGTTCTGATGGGATCCGAT
1 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* *
10236 GCATTAGTGCTGGAATGAT-GTCACCAATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCT
66 GCATTAGTGCTGGTATGATCG-CACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCT
10300 TTCATCCCA
130 TTCATCCCA
10309 GGAGGTCACC
Statistics
Matches: 2897, Mismatches: 302, Indels: 84
0.88 0.09 0.03
Matches are distributed among these distances:
336 150 0.05
338 80 0.03
339 88 0.03
340 229 0.08
341 78 0.03
342 120 0.04
343 480 0.17
344 6 0.00
345 2 0.00
346 122 0.04
347 494 0.17
348 613 0.21
349 434 0.15
350 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (347 bp):
GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
GCATTAGTGCTGGTATGATCGCACCCATTATGTTCTGCGCAATCTATTTACATAAAGGCTACCTT
TCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAAATAATGCTCGGGAAGACGTATTT
TCGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCTTTACTATT
TCGCAAAATTGCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAACAAAAAGAGGGTG
CAACACGAGGACTTCCCAGGAG
Found at i:10420 original size:142 final size:142
Alignment explanation
Indices: 10162--10450 Score: 436
Period size: 142 Copynumber: 2.0 Consensus size: 142
10152 CACGAGGACT
* *
10162 TCCCAGGAGGTCACCCATCCTAGTGCTACTCTCGCCCGAGCGCGCTTAACTACGGAGTTCTGATG
1 TCCCAGGAGGTCACCCATCCTAGTGCTACTCTCGCCCAAGCACGCTTAACTACGGAGTTCTGATG
* **
10227 GGATCCGATGCATTAGTGCTGGAATGATGTCACCAATTATGTTCTGCGCAATCTATTTACATAAA
66 GGATCCGATGCATCAGTGCTGGAATGATGTCACCAATTATGTTCTAAGCAATCTATTTACATAAA
*
10292 GGCTACCTTTCA
131 GACTACCTTTCA
* *
10304 TCCCAGGAGGTCACCCATCCTAGTGCTACTCTCGCCCAAGCATGCTTAATTACGGAGTTCTGATG
1 TCCCAGGAGGTCACCCATCCTAGTGCTACTCTCGCCCAAGCACGCTTAACTACGGAGTTCTGATG
* * ** * *
10369 GGATCCGGTGCATCAGTGCTGGTATGATCG-CACCCTTTTTTTTCTAAGCAATCTATTTACATAA
66 GGATCCGATGCATCAGTGCTGGAATGAT-GTCACCAATTATGTTCTAAGCAATCTATTTACATAA
10433 AGACTACCTTTCA
130 AGACTACCTTTCA
10446 TCCCA
1 TCCCA
10451 TTCATGTCGC
Statistics
Matches: 132, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
142 131 0.99
143 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (142 bp):
TCCCAGGAGGTCACCCATCCTAGTGCTACTCTCGCCCAAGCACGCTTAACTACGGAGTTCTGATG
GGATCCGATGCATCAGTGCTGGAATGATGTCACCAATTATGTTCTAAGCAATCTATTTACATAAA
GACTACCTTTCA
Found at i:11806 original size:347 final size:340
Alignment explanation
Indices: 10304--11985 Score: 1731
Period size: 347 Copynumber: 4.9 Consensus size: 340
10294 CTACCTTTCA
* ** * * *
10304 TCCCAGGAGGTCACCCATCCTAGTGCTACTCTCGCCCAAGCATGCTTAATTACGGAGTTCTGATG
1 TCCCAGAAGGTCACCCATCCTAGAACTACTCTCGCCC-AG-ACGCTTAACTGCGGAGTTCTGATG
* * ** *
10369 GGATCCGGTGCATCAGTGCTGGTATGATCGCACCC-TT-T-TTTTTCTAAGCAATCTATTTACAT
64 GGATCCGATGCATTAGTGCTGGTATGATAACACCCATTATGTTTTGC--A-CAATCTATTTACAT
* * * * * **
10431 AAAGACTACCTTTCATCCCATTCATGTCGCGAATTTGAATGTAAATATACGCAAATAATGCTTGG
126 AAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATAC-CCAATAATGCTCAG
** * *
10496 GAAGACGTATTTTTACGGATAAAAAT-AAATAAAAACATGCTAATAATGTCCATGTAT-ACCATG
190 GAAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGATAATAATGTCCATGTATCA-CATG
* * * * * * * *
10559 GAGCTTTGCTATTTCGCAAAATTTCAAACTCACGATAAATAAAATAATACAAAAAGAAAAAAAAA
254 AAGCATTACTATTTCGCAAAATTGCAAACTTACAATAAATAAAACAAT----AAA-ATAAAAAAA
**
10624 ACAAAAAAAAGGGTGCAACACGAGGACT
314 AC-AAAAAGGGGGTGCAACACGAGGACT
*
10652 TCCCA-AGAGGTCACCCATCCTATG--CTACTCTCGCCCAAGCACACTTAACTGCGGAGTTCTGA
1 TCCCAGA-AGGTCACCCATCCTA-GAACTACTCTCGCCC-AG-ACGCTTAACTGCGGAGTTCTGA
* * * ** * * * ** *
10714 TGGGATCCGGTACATTAGTGCTGTTATGATCGCTCCCATTATATTTTCCTTAATCTGTTTACATA
62 TGGGATCCGATGCATTAGTGCTGGTATGATAACACCCATTATGTTTTGCACAATCTATTTACATA
* * **
10779 AAGGCTACC-TTCATCCCATTCGTGTCTCGAATTTGAATGTAAATATACCTAAATAATGCTTGGG
127 AAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACC-CAATAATGCTCAGG
* * * *
10843 AAGACCTATTTTCGCGGATAAAAATAAAATAAAAACATGTTAATAATGTCCTTGTATC-CTATGA
191 AAGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGATAATAATGTCCATGTATCAC-ATGA
* *
10907 AGCATTACTATTT--C-AAA----AAA-TTAC-A-AACT--TA-AATAAAATAAAAAAAACAAAA
255 AGCATTACTATTTCGCAAAATTGCAAACTTACAATAAATAAAACAATAAAATAAAAAAAACAAAA
*
10959 AGAGGGGTGCAACACGAGGATT
320 AG-GGGGTGCAACACGAGGACT
* *
10981 TCCCAGAAGGTCACCCATCCTAGAACTACTCTCGCCCAAGACGCTTAACTCCGGAGTTCTAATGG
1 TCCCAGAAGGTCACCCATCCTAGAACTACTCTCGCCC-AGACGCTTAACTGCGGAGTTCTGATGG
* *
11046 GATCTGGTGCATTAGTGCTGGTATGATAACACCCATTATGTTTTGCACAATCTATTTACATAAAG
65 GATCCGATGCATTAGTGCTGGTATGATAACACCCATTATGTTTTGCACAATCTATTTACATAAAG
* *
11111 GCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAACAATGCTTAGGAAGA
130 GCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAATAATGCTCAGGAAGA
* * *
11176 CGTATTTTCACGGATAAAAATACAATAAAAACAAGATAATAATGTCCATGTATCACATGAAGCAT
195 CGTATTTTCGCGGATAAAAATAAAATAAAAACACGATAATAATGTCCATGTATCACATGAAGCAT
* * ** * * * *
11241 TACTATTTTGAAAAAAAGAAAACTTACGATAAGTAAAATAATATAAANNNNNNNNNNNNNNNNNN
260 TACTATTTCGCAAAATTGCAAACTTACAATAAATAAAACAATA-AAA------------------
**** * * *
11306 NNNNAAAAA-AAAAAGAGGGTGCAATATGAGGACT
306 TAAAAAAAACAAAAAGGGGGTGCAACACGAGGACT
* * * * *
11340 TCCCAGGAGGTCACCCATCCTA-ATACTACTCTCGGCCATGCACGCTTAACTGCAGAGTCCAGAT
1 TCCCAGAAGGTCACCCATCCTAGA-ACTACTCTCGCCCA-G-ACGCTTAACTGCGGAGTTCTGAT
** * * ** ** * * * * *
11404 GAAATCCAATGCATTAGTGTTGGTATGATTGCAGTCATTGTATTCTGCGCAATCTATTTATATAA
63 GGGATCCGATGCATTAGTGCTGGTATGATAACACCCATTATGTTTTGCACAATCTATTTACATAA
* *
11469 AGGCTACCTTTCTTCCCATTCGTGTCTCGAATTTGAATGTAAATATACCCAAATAATGCTCAGGA
128 AGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCC-AATAATGCTCAGGA
* * **
11534 AGACGTATTTTCGTGGATAAAAATAAAATAAAAACACGTTAATAATGTCCATGTATCGTATGAAG
192 AGACGTATTTTCGCGGATAAAAATAAAATAAAAACACGATAATAATGTCCATGTATCACATGAAG
*
11599 CATTACTATTTCGCAAAATTGCAAACTTAAAATAAATAAAACAATACAAATAGAAAAAAACCAAA
257 CATTACTATTTCGCAAAATTGCAAACTTACAATAAATAAAACAATA-AAATA-AAAAAAA-CAAA
11664 AAGTGGGGTGCAACACGAGGACT
319 AAG-GGGGTGCAACACGAGGACT
* *
11687 TCCCAGAAGGTCACCTATCCTAGAACTCCTCTCGCCCGAGAACGCTTAACTGCGGAGTTCTGATG
1 TCCCAGAAGGTCACCCATCCTAGAACTACTCTCGCCC-AG-ACGCTTAACTGCGGAGTTCTGATG
*
11752 GGATCCGATGCATTAGTGCTGGTATGATAACACCCTTTATGTTTTGCACAATCTATTTACATAAA
64 GGATCCGATGCATTAGTGCTGGTATGATAACACCCATTATGTTTTGCACAATCTATTTACATAAA
11817 GGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAATAATGCTCAGGAAG
129 GGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAATAATGCTCAGGAAG
* * * *
11882 ACGTATTTTTGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCT
194 ACGTATTTTCGCGGATAAAAATAAAATAAAAACACGATAATAATGTCCATGTATCACATGAAGCA
*
11947 TTACTATTTCGCAAAATTCCAAACTTACAATAAATAAAA
259 TTACTATTTCGCAAAATTGCAAACTTACAATAAATAAAA
11986 TAGTACGAAA
Statistics
Matches: 1129, Mismatches: 148, Indels: 116
0.81 0.11 0.08
Matches are distributed among these distances:
328 6 0.01
329 209 0.19
330 59 0.05
332 3 0.00
334 3 0.00
335 1 0.00
336 3 0.00
337 7 0.01
338 2 0.00
339 6 0.01
340 3 0.00
341 1 0.00
342 4 0.00
343 3 0.00
344 8 0.01
345 2 0.00
346 192 0.17
347 298 0.26
348 24 0.02
349 2 0.00
350 5 0.00
358 2 0.00
359 49 0.04
360 122 0.11
361 115 0.10
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (340 bp):
TCCCAGAAGGTCACCCATCCTAGAACTACTCTCGCCCAGACGCTTAACTGCGGAGTTCTGATGGG
ATCCGATGCATTAGTGCTGGTATGATAACACCCATTATGTTTTGCACAATCTATTTACATAAAGG
CTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAATAATGCTCAGGAAGAC
GTATTTTCGCGGATAAAAATAAAATAAAAACACGATAATAATGTCCATGTATCACATGAAGCATT
ACTATTTCGCAAAATTGCAAACTTACAATAAATAAAACAATAAAATAAAAAAAACAAAAAGGGGG
TGCAACACGAGGACT
Found at i:11973 original size:707 final size:676
Alignment explanation
Indices: 10304--11987 Score: 2109
Period size: 707 Copynumber: 2.4 Consensus size: 676
10294 CTACCTTTCA
* ** * *
10304 TCCCAGGAGGTCACCCATCCTAGTGCTACTCTCGCCCAAGCATGCTTAATTACGGAGTTCTGATG
1 TCCCAGAAGGTCACCCATCCTAGAACTACTCTCGCCCAAG-ACGCTTAACTACGGAGTTCTGATG
* **
10369 GGATCCGGTGCATCAGTGCTGGTATGATCGCACCCTTT-T-TTTT-CTAAGCAATCTATTTACAT
65 GGATCCGGTGCATTAGTGCTGGTATGATAACACCCTTTATGTTTTGC--A-CAATCTATTTACAT
* * * * * *
10431 AAAGACTACCTTTCATCCCATTCATGTCGCGAATTTGAATGTAAATATACGCAAATAATGCTTGG
127 AAAGGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATAC-CCAATAATGCTTAG
* * *
10496 GAAGACGTATTTTTACGGATAAAAAT-AAATAAAAACATGCTAATAATGTCCATGTATACCATGG
191 GAAGACGTATTTTTACGGATAAAAATAAAATAAAAACAAGCTAATAATGTCCATGTATCCCATGA
* * *
10560 AGCTTTGCTATTTCGCAAAATTTCAAACTCACGATAAATAAAATAATACAAAAAGAAAAAAAAAA
256 AGCTTTACTATTTCGCAAAATTCCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAAA
*
10625 CAAAAAAAAGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTATGCTACTCTCGCCCAA
321 CAAAAAAAAGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTATACTACTCTCGCCCAA
* * * ** ** * *
10690 GCACACTTAACTGCGGAGTTCTGATGGGATCCGGTACATTAGTGCTGTTATGATCGCTCCCATTA
386 GCACACTTAACTGCAGAGTCCAGATGAAATCCAATACATTAGTGCTGGTATGATCGCACCCATTA
* ** *
10755 TATTTTCCTTAATCTGTTTACATAAAGGCTACCTTCATCCCATTCGTGTCTCGAATTTGAATGTA
451 TATTCTCCGCAATCTATTTACATAAAGGCTACCTTCATCCCATTCGTGTCTCGAATTTGAATGTA
* ** *
10820 AATATACCTAAATAATGCTTGGGAAGACCTATTTTCGCGGATAAAAATAAAATAAAAACATGTTA
516 AATATACCCAAATAATGCTCAGGAAGACCTATTTTCGCGGATAAAAATAAAATAAAAACACGTTA
* * * *
10885 ATAATGTCCTTGTATCCTATGAAGCATTACTATTTCAAAAAATTACAAACTTAAATAAAATAAAA
581 ATAATGTCCATGTATCCTATGAAGCATTACTATTTCAAAAAATTAAAAAATAAAATAAAATAAAA
*
10950 AAAACAAAAAGAGGGGTGCAACACGAGGATT
646 AAAACAAAAAGAGGGGTGCAACACGAGGACT
* *
10981 TCCCAGAAGGTCACCCATCCTAGAACTACTCTCGCCCAAGACGCTTAACTCCGGAGTTCTAATGG
1 TCCCAGAAGGTCACCCATCCTAGAACTACTCTCGCCCAAGACGCTTAACTACGGAGTTCTGATGG
* *
11046 GATCTGGTGCATTAGTGCTGGTATGATAACACCCATTATGTTTTGCACAATCTATTTACATAAAG
66 GATCCGGTGCATTAGTGCTGGTATGATAACACCCTTTATGTTTTGCACAATCTATTTACATAAAG
*
11111 GCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAACAATGCTTAGGAAGA
131 GCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAATAATGCTTAGGAAGA
* * * * *
11176 CGTATTTTCACGGATAAAAATACAATAAAAACAAGATAATAATGTCCATGTATCACATGAAGCAT
196 CGTATTTTTACGGATAAAAATAAAATAAAAACAAGCTAATAATGTCCATGTATCCCATGAAGCTT
* * **** * * *****
11241 TACTATTTTGAAAAAAAGAAAACTTACGATAAGTAAAATAATATAAANNNNNNNNNNNNNNNNNN
261 TACTATTTCGCAAAATTCCAAACTTACGATAAATAAAATAATACAAA-------------AAGAA
**** * * * *
11306 NNNNAAAA-AAAAAAGAGGGTGCAATATGAGGACTTCCCAGGAGGTCACCCATCCTAATACTACT
313 AAAAAAAACAAAAAAAAGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCT-ATACTACT
* * * * * *
11370 CTCGGCCATGCACGCTTAACTGCAGAGTCCAGATGAAATCCAATGCATTAGTGTTGGTATGATTG
377 CTCGCCCAAGCACACTTAACTGCAGAGTCCAGATGAAATCCAATACATTAGTGCTGGTATGATCG
** * * * *
11435 CAGTCATTGTATTCTGCGCAATCTATTTATATAAAGGCTACCTTTCTTCCCATTCGTGTCTCGAA
442 CACCCATTATATTCTCCGCAATCTATTTACATAAAGGCTACC-TTCATCCCATTCGTGTCTCGAA
* *
11500 TTTGAATGTAAATATACCCAAATAATGCTCAGGAAGACGTATTTTCGTGGATAAAAATAAAATAA
506 TTTGAATGTAAATATACCCAAATAATGCTCAGGAAGACCTATTTTCGCGGATAAAAATAAAATAA
*
11565 AAACACGTTAATAATGTCCATGTATCGTATGAAGCATTACTATTTCGCAAAATTGCAAACTTAAA
571 AAACACGTTAATAATGTCCATGTATCCTATGAAGCATTACTATTT--C-AAA----AAA-TT-AA
*
11630 ATAAATAAAACAATACAAATAGAAAAAAACCAAAAAGTGGGGTGCAACACGAGGACT
627 A-AAAT--AA-AATA-AAATA-AAAAAAA-CAAAAAGAGGGGTGCAACACGAGGACT
* * * *
11687 TCCCAGAAGGTCACCTATCCTAGAACTCCTCTCGCCCGAGAACGCTTAACTGCGGAGTTCTGATG
1 TCCCAGAAGGTCACCCATCCTAGAACTACTCTCGCCCAAG-ACGCTTAACTACGGAGTTCTGATG
*
11752 GGATCCGATGCATTAGTGCTGGTATGATAACACCCTTTATGTTTTGCACAATCTATTTACATAAA
65 GGATCCGGTGCATTAGTGCTGGTATGATAACACCCTTTATGTTTTGCACAATCTATTTACATAAA
*
11817 GGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAATAATGCTCAGGAAG
130 GGCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAATAATGCTTAGGAAG
* *
11882 ACGTATTTTTGCGGATAAAAATAAAATAAAAACACGCTAATAATGTCCATGTATCCCATGAAGCT
195 ACGTATTTTTACGGATAAAAATAAAATAAAAACAAGCTAATAATGTCCATGTATCCCATGAAGCT
*
11947 TTACTATTTCGCAAAATTCCAAACTTACAATAAATAAAATA
260 TTACTATTTCGCAAAATTCCAAACTTACGATAAATAAAATA
11988 GTACGAAA
Statistics
Matches: 857, Mismatches: 114, Indels: 42
0.85 0.11 0.04
Matches are distributed among these distances:
675 36 0.04
676 186 0.22
677 39 0.05
678 4 0.00
679 1 0.00
688 43 0.05
689 94 0.11
690 123 0.14
692 1 0.00
693 3 0.00
697 3 0.00
698 2 0.00
699 2 0.00
700 3 0.00
702 1 0.00
703 4 0.00
704 5 0.01
705 7 0.01
706 62 0.07
707 238 0.28
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (676 bp):
TCCCAGAAGGTCACCCATCCTAGAACTACTCTCGCCCAAGACGCTTAACTACGGAGTTCTGATGG
GATCCGGTGCATTAGTGCTGGTATGATAACACCCTTTATGTTTTGCACAATCTATTTACATAAAG
GCTACCTTTCATCCCATTCGTGCCTCGAATTTGAATGTAAATATACCCAATAATGCTTAGGAAGA
CGTATTTTTACGGATAAAAATAAAATAAAAACAAGCTAATAATGTCCATGTATCCCATGAAGCTT
TACTATTTCGCAAAATTCCAAACTTACGATAAATAAAATAATACAAAAAGAAAAAAAAAACAAAA
AAAAGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTATACTACTCTCGCCCAAGCACA
CTTAACTGCAGAGTCCAGATGAAATCCAATACATTAGTGCTGGTATGATCGCACCCATTATATTC
TCCGCAATCTATTTACATAAAGGCTACCTTCATCCCATTCGTGTCTCGAATTTGAATGTAAATAT
ACCCAAATAATGCTCAGGAAGACCTATTTTCGCGGATAAAAATAAAATAAAAACACGTTAATAAT
GTCCATGTATCCTATGAAGCATTACTATTTCAAAAAATTAAAAAATAAAATAAAATAAAAAAAAC
AAAAAGAGGGGTGCAACACGAGGACT
Done.