Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009546.1 Kokia drynarioides strain JFW-HI SEQ_124258, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1036
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.42


Found at i:831 original size:16 final size:17

Alignment explanation


    Indices: 810--842  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        800 GACCAAATTG

                             
        810 TATG-TTTTTTTAGCTA
          1 TATGTTTTTTTTAGCTA

                             
        826 TATGTTTTTTTTAGCTA
          1 TATGTTTTTTTTAGCTA

        843 AGTGACCAGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    4  0.25
  17   12  0.75

ACGTcount: A:0.18, C:0.06, G:0.12, T:0.64


Consensus pattern (17 bp):   
TATGTTTTTTTTAGCTA

Done.