Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009548.1 Kokia drynarioides strain JFW-HI SEQ_124260, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11943
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:11635 original size:39 final size:39

Alignment explanation


    Indices: 11590--11672  Score: 112
    Period size: 39  Copynumber: 2.1  Consensus size: 39

      11580 TTGGTATTCG

                                *     **           
      11590 AATTTTAAAATTTTAGTCTCTACCAAGTGGTAACTATTA
          1 AATTTTAAAATTTTAGTCTCCACCAAACGGTAACTATTA

                          *       **               
      11629 AATTTTAAAATTTTGGTCTCCATTAAACGGTAACTATTA
          1 AATTTTAAAATTTTAGTCTCCACCAAACGGTAACTATTA

                 
      11668 AATTT
          1 AATTT

      11673 ACTGAGTTAA


Statistics
Matches: 38,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42


Consensus pattern (39 bp):   
AATTTTAAAATTTTAGTCTCCACCAAACGGTAACTATTA
Done.