Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009550.1 Kokia drynarioides strain JFW-HI SEQ_124262, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2479
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35


Found at i:1283 original size:43 final size:43

Alignment explanation


    Indices: 1235--1322  Score: 176
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       1225 ATGTTTCATG

                                                       
       1235 AAACTAACTAAAAAATTGACAAACACAAGTGCACCTATCAATT
          1 AAACTAACTAAAAAATTGACAAACACAAGTGCACCTATCAATT

                                                       
       1278 AAACTAACTAAAAAATTGACAAACACAAGTGCACCTATCAATT
          1 AAACTAACTAAAAAATTGACAAACACAAGTGCACCTATCAATT

              
       1321 AA
          1 AA

       1323 TAGTGTAGCT


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  43   45  1.00

ACGTcount: A:0.52, C:0.20, G:0.07, T:0.20


Consensus pattern (43 bp):   
AAACTAACTAAAAAATTGACAAACACAAGTGCACCTATCAATT
Done.