genome.fa.s9555.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009555.1 Kokia drynarioides strain JFW-HI SEQ_124267, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  226865

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9259--9316	28	2.1	28	80	3	64	37	6	20	34	1.80
9676--9701	2	13.0	2	100	0	52	50	0	0	50	1.00
13137--13209	4	17.8	4	78	5	74	65	2	2	28	1.20
13137--13209	29	2.5	28	82	4	83	65	2	2	28	1.20
18190--18227	17	2.3	16	83	16	51	60	0	2	36	1.11
18568--18613	3	15.3	3	100	0	92	65	0	0	34	0.93
18725--18764	21	1.9	21	84	0	53	65	2	5	27	1.27
19505--19548	19	2.4	18	76	3	52	68	2	0	29	1.02
19507--19565	27	2.1	27	84	9	75	66	1	0	32	1.02
19479--19566	28	3.1	28	72	15	74	62	2	2	32	1.20
19535--19573	20	2.0	20	84	0	51	61	2	0	35	1.10
19573--19646	29	2.6	29	77	16	73	56	1	4	37	1.27
20081--20164	10	8.2	10	73	15	73	38	1	2	58	1.19
20081--20159	21	3.8	21	80	8	81	37	1	2	58	1.20
20134--20180	20	2.3	21	85	7	62	36	0	4	59	1.17
20152--20204	25	2.1	26	83	16	67	35	0	7	56	1.28
20172--20245	18	4.2	17	71	19	55	37	2	2	56	1.28
20188--20329	72	2.0	71	94	1	248	33	4	4	57	1.39
21999--22121	20	6.2	20	72	11	99	14	32	20	32	1.93
29170--29215	14	3.0	15	78	21	51	60	0	2	36	1.09
33112--33150	20	2.0	20	85	10	53	20	7	2	69	1.26
36596--36691	47	2.0	47	95	0	174	38	5	13	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45494--45603	41	2.9	35	69	19	96	51	9	3	35	1.51
45634--45672	20	1.9	21	84	5	53	53	0	5	41	1.23
48310--48360	18	2.7	19	84	6	59	39	7	3	49	1.51
50568--50621	19	2.8	20	81	13	67	55	5	3	35	1.41
50629--50667	17	2.3	17	86	8	53	28	2	5	64	1.28
52346--52411	31	2.2	30	83	2	78	43	16	7	31	1.76
59483--59540	26	2.2	26	75	6	64	56	3	1	37	1.26
59780--59824	20	2.2	20	92	0	72	33	28	24	13	1.93
59790--59829	20	2.0	20	95	0	71	32	30	22	15	1.94
64073--64109	19	1.9	19	100	0	74	32	21	29	16	1.95
64469--64523	28	1.9	29	82	10	69	34	14	1	49	1.54
80930--80961	3	10.7	3	100	0	64	65	0	0	34	0.93
82740--82808	30	2.4	29	78	4	77	37	20	4	37	1.72
85107--85134	3	9.3	3	100	0	56	64	0	0	35	0.94
91480--91540	13	4.4	14	76	13	54	67	4	27	0	1.11
91497--91539	22	2.0	20	82	8	50	67	4	27	0	1.10
92824--92918	48	2.0	48	95	0	172	26	29	20	24	1.99
97527--97607	41	2.0	41	87	0	117	18	29	20	30	1.97
119739--119871	64	2.1	64	100	0	266	24	10	6	59	1.53
127239--127295	3	19.0	3	77	13	55	70	0	28	1	0.98
127239--127295	18	3.2	17	82	7	69	70	0	28	1	0.98
127239--127295	24	2.5	23	80	8	64	70	0	28	1	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132634--132686	26	2.0	26	85	0	70	30	20	20	28	1.98
132676--132760	37	2.3	37	80	8	93	36	12	21	29	1.91
135905--135947	14	3.1	14	80	3	52	74	4	0	20	1.00
135898--135946	18	2.5	20	80	16	57	71	8	0	20	1.11
135968--136024	17	3.4	17	76	13	55	71	3	1	22	1.10
137316--137349	13	2.8	12	86	4	50	23	0	5	70	1.09
138676--138708	13	2.4	14	95	5	59	48	0	18	33	1.48
141899--141938	14	2.8	15	85	11	57	12	7	0	80	0.91
150493--150550	24	2.4	25	94	2	100	1	20	0	77	0.86
150493--150596	4	26.0	4	75	7	77	0	26	0	72	0.91
150499--150570	29	2.6	28	82	8	85	1	23	0	75	0.89
163052--163117	16	3.9	16	84	9	78	9	19	0	71	1.12
163072--163112	15	2.8	14	86	13	64	7	19	0	73	1.07
163052--163117	17	3.9	17	84	13	82	9	19	0	71	1.12
163644--163716	31	2.4	30	80	13	78	42	5	17	34	1.73
169800--169846	24	2.0	23	84	12	60	25	12	10	51	1.72
173244--173270	2	13.5	2	100	0	54	48	0	0	51	1.00
188232--188297	34	1.9	34	84	6	89	19	19	13	46	1.83
188240--188297	17	3.4	17	75	0	53	20	17	13	48	1.81
189174--189217	17	2.5	17	82	13	54	68	0	22	9	1.18
189875--189972	38	2.6	38	77	7	110	32	23	13	30	1.93
189964--190014	26	2.0	26	92	0	84	29	23	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199114--199161	18	2.7	18	81	12	62	58	0	37	4	1.18
205058--205085	12	2.3	12	100	0	56	71	0	28	0	0.86
206685--206781	36	2.6	38	87	4	137	30	32	14	21	1.93
206890--206943	26	2.1	26	85	0	72	27	16	22	33	1.95
210898--210973	38	2.0	38	94	0	134	19	21	10	48	1.78
216026--216064	12	3.2	12	85	0	60	0	30	0	69	0.89
222499--222567	34	2.0	34	97	0	129	17	17	24	40	1.90

Tables:   1

The End!