Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009562.1 Kokia drynarioides strain JFW-HI SEQ_124274, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109450

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
132--169
11
3.2
12
85
7
51
65
10
0
23
1.23
410--448
18
2.3
16
91
8
60
0
43
0
56
0.99
401--477
24
3.4
24
73
16
67
0
31
0
68
0.90
445--487
4
10.8
4
80
9
52
0
20
0
79
0.74
445--487
21
2.2
19
91
8
68
0
20
0
79
0.74
454--486
13
2.5
13
90
9
50
0
21
0
78
0.75
821--845
6
4.2
6
100
0
50
84
0
0
16
0.63
8447--8602
82
1.9
80
90
2
249
33
30
22
13
1.92
9021--9066
22
2.1
22
88
8
67
65
4
4
26
1.30
9639--9855
81
2.7
83
88
5
318
17
8
18
54
1.68
12100--12184
28
2.9
29
73
14
77
47
11
2
38
1.53
12103--12163
30
2.0
30
84
6
79
50
8
1
39
1.42
12130--12204
27
2.8
28
79
4
73
42
14
0
42
1.45
13388--13451
30
2.1
30
82
5
76
46
3
12
37
1.57
18149--18176
9
3.1
9
100
0
56
53
0
0
46
1.00
20081--20139
31
1.9
32
86
6
86
33
3
15
47
1.62
25288--25334
24
2.0
24
82
0
58
55
12
4
27
1.56
32417--32441
2
12.5
2
100
0
50
48
0
0
52
1.00
33685--33727
23
1.9
22
85
4
59
46
6
4
41
1.51
35079--35109
5
6.2
5
92
0
53
77
0
3
19
0.90
35346--35389
3
14.7
3
100
0
88
34
0
0
65
0.93
35393--35446
18
2.8
19
83
8
65
37
5
1
55
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35793--35844
26
2.1
24
85
7
68
63
7
3
25
1.38
40359--40394
9
4.0
9
96
0
63
22
25
22
30
1.99
42211--42407
57
3.3
60
77
9
208
32
15
17
34
1.91
42120--42313
102
1.9
100
88
6
293
31
13
19
35
1.91
42770--42884
60
1.9
58
81
6
133
33
19
13
33
1.91
45881--45919
19
2.1
19
100
0
78
20
10
25
43
1.83
59502--59543
16
2.6
16
76
23
52
35
0
0
64
0.94
59530--59595
31
2.2
31
86
8
91
53
1
4
40
1.31
68644--68699
17
3.3
17
75
9
69
16
12
5
66
1.42
73702--73732
16
2.0
16
93
6
55
45
6
0
48
1.28
74284--74332
24
2.0
26
84
8
66
59
0
14
26
1.36
86431--86464
17
2.0
17
88
11
52
70
8
0
20
1.13
90633--90658
6
4.3
6
100
0
52
0
0
69
30
0.89
96718--96747
2
15.0
2
92
0
51
46
0
3
50
1.18
101666--101696
2
15.5
2
100
0
62
48
0
0
51
1.00
102374--102419
23
2.0
23
86
4
65
39
10
4
45
1.59
103040--103082
17
2.7
15
76
13
50
2
32
0
65
1.06
103096--103141
23
2.0
23
83
8
58
2
17
2
78
0.96

Tables:   1

The End!