Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009563.1 Kokia drynarioides strain JFW-HI SEQ_124275, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10922
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:551 original size:29 final size:29

Alignment explanation


    Indices: 518--578  Score: 113
    Period size: 29  Copynumber: 2.1  Consensus size: 29

        508 AACAGAGTTA

                                         
        518 TGCAATCGATAACACGCCTCGGTACTAAG
          1 TGCAATCGATAACACGCCTCGGTACTAAG

                             *           
        547 TGCAATCGATAACACGCTTCGGTACTAAG
          1 TGCAATCGATAACACGCCTCGGTACTAAG

               
        576 TGC
          1 TGC

        579 CTACCCCGTA


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   31  1.00

ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23


Consensus pattern (29 bp):   
TGCAATCGATAACACGCCTCGGTACTAAG

Found at i:8066 original size:19 final size:19

Alignment explanation


    Indices: 8042--8079  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       8032 AAGATTCCCG

                               
       8042 ATGTAGACTTCACAGACGT
          1 ATGTAGACTTCACAGACGT

                               
       8061 ATGTAGACTTCACAGACGT
          1 ATGTAGACTTCACAGACGT

       8080 GTTTTCTCCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26


Consensus pattern (19 bp):   
ATGTAGACTTCACAGACGT
Done.