Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009565.1 Kokia drynarioides strain JFW-HI SEQ_124278, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 145433
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Warning! 53 characters in sequence are not A, C, G, or T
Found at i:160 original size:93 final size:93
Alignment explanation
Indices: 1--182 Score: 355
Period size: 93 Copynumber: 2.0 Consensus size: 93
1 GGTTTAGGGTGATATGGTGGGTTTACCACTGGAGGCTTAGGTGGCTTTGGAGGATGATGAATTGG
1 GGTTTAGGGTGATATGGTGGGTTTACCACTGGAGGCTTAGGTGGCTTTGGAGGATGATGAATTGG
66 AGGTTTAGGGTGATACGGTGGCTTCGGT
66 AGGTTTAGGGTGATACGGTGGCTTCGGT
94 GGTTTAGGGTGATATGGTGGGTTTACCACTGGAGGCTTAGGTGGCTTTGGAGGATGATGAATTGG
1 GGTTTAGGGTGATATGGTGGGTTTACCACTGGAGGCTTAGGTGGCTTTGGAGGATGATGAATTGG
*
159 AGGTTTAGGGTGATAGGGTGGCTT
66 AGGTTTAGGGTGATACGGTGGCTT
183 AACAATGGGA
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 88 1.00
ACGTcount: A:0.18, C:0.08, G:0.42, T:0.32
Consensus pattern (93 bp):
GGTTTAGGGTGATATGGTGGGTTTACCACTGGAGGCTTAGGTGGCTTTGGAGGATGATGAATTGG
AGGTTTAGGGTGATACGGTGGCTTCGGT
Found at i:857 original size:14 final size:15
Alignment explanation
Indices: 820--861 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
810 TTTATTTGTT
820 TCATATTATATTTTAA
1 TCATATTATA-TTTAA
*
836 TCA-CTTATATTTAA
1 TCATATTATATTTAA
850 -CATATTATATTT
1 TCATATTATATTT
862 TAGTTATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 2 0.09
14 13 0.57
15 5 0.22
16 3 0.13
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.55
Consensus pattern (15 bp):
TCATATTATATTTAA
Found at i:1856 original size:26 final size:26
Alignment explanation
Indices: 1800--1856 Score: 64
Period size: 24 Copynumber: 2.2 Consensus size: 26
1790 AGATTTTTTA
* *
1800 ATAATTTTATTATATTTTTTTCATAC
1 ATAAATTTATTATATTTTTTTCAAAC
*
1826 -GAAATTTA-TATATTTTTTTCAAATC
1 ATAAATTTATTATATTTTTTTCAAA-C
1851 ATAAAT
1 ATAAAT
1857 AAAAAAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
24 14 0.56
25 7 0.28
26 4 0.16
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.54
Consensus pattern (26 bp):
ATAAATTTATTATATTTTTTTCAAAC
Found at i:2778 original size:30 final size:31
Alignment explanation
Indices: 2722--2779 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
2712 AAATATATAG
* *
2722 TGACTTAAATAAAAACTTTATGATAATTTAA
1 TGACTTAAATAAAAAATTTATAATAATTTAA
2753 TGACTTAAA-AAAAAATTTCA-AATAATT
1 TGACTTAAATAAAAAATTT-ATAATAATT
2780 CATTGACCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.52, C:0.07, G:0.05, T:0.36
Consensus pattern (31 bp):
TGACTTAAATAAAAAATTTATAATAATTTAA
Found at i:3660 original size:36 final size:38
Alignment explanation
Indices: 3587--3669 Score: 125
Period size: 36 Copynumber: 2.2 Consensus size: 38
3577 TATATTTTTT
*
3587 ATTACATGATTATTAAATGAATTTTCTTTTTTATTTTAA
1 ATTAC-TGATTATTAAATGAATTTTCTTTTTAATTTTAA
3626 ATTACTGATTATTAAATGAA-TTT-TTTTTAATTTTAA
1 ATTACTGATTATTAAATGAATTTTCTTTTTAATTTTAA
*
3662 AATACTGA
1 ATTACTGA
3670 ATGATTAAGT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
36 19 0.45
37 3 0.07
38 15 0.36
39 5 0.12
ACGTcount: A:0.36, C:0.05, G:0.06, T:0.53
Consensus pattern (38 bp):
ATTACTGATTATTAAATGAATTTTCTTTTTAATTTTAA
Found at i:4367 original size:74 final size:74
Alignment explanation
Indices: 4232--4369 Score: 174
Period size: 74 Copynumber: 1.9 Consensus size: 74
4222 AAATACTTTG
* * * *
4232 AAATAAATGTAGGGGACTAAATTTCACATGCACAAAACATACAAAAACTTGAGGCATATTTTAAC
1 AAATAAATGTAGGGGACTAAATTTCAAATGCACAAAAAATACAAAAACTTGAGACACATTTTAAC
4297 CATTCCTTA
66 CATTCCTTA
* *
4306 AAATATAA-GTAGAGGGACTAAA-TTCAAATGCGCAAAAAATACATAAACTTGTA-ACACATTTT
1 AAATA-AATGTAG-GGGACTAAATTTCAAATGCACAAAAAATACAAAAACTTG-AGACACATTTT
4368 AA
63 AA
4370 TTTTTTTTGG
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
74 43 0.78
75 12 0.22
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.26
Consensus pattern (74 bp):
AAATAAATGTAGGGGACTAAATTTCAAATGCACAAAAAATACAAAAACTTGAGACACATTTTAAC
CATTCCTTA
Found at i:7333 original size:18 final size:18
Alignment explanation
Indices: 7280--7332 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
7270 ATTTATCATC
*
7280 AATAAATAATTTTAAAAT
1 AATAAAAAATTTTAAAAT
*
7298 AAT-AAAAATGTTTGAAAT
1 AATAAAAAAT-TTTAAAAT
7316 AATAAAAAATTTCTAAA
1 AATAAAAAATTT-TAAA
7333 TTCCAAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 5 0.17
18 15 0.52
19 9 0.31
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (18 bp):
AATAAAAAATTTTAAAAT
Found at i:13106 original size:12 final size:12
Alignment explanation
Indices: 13089--13122 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
13079 TATAACAATC
13089 AAAAATGAAAAA
1 AAAAATGAAAAA
13101 AAAAATGAAAAA
1 AAAAATGAAAAA
*
13113 AAAATTGAAA
1 AAAAATGAAA
13123 GAAATGAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.79, C:0.00, G:0.09, T:0.12
Consensus pattern (12 bp):
AAAAATGAAAAA
Found at i:14422 original size:12 final size:12
Alignment explanation
Indices: 14405--14456 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
14395 TAAAAATAAT
*
14405 AAAAATAGCAAC
1 AAAAATAACAAC
*
14417 AAAAATAACAGC
1 AAAAATAACAAC
*
14429 AAAAACAAC-AC
1 AAAAATAACAAC
*
14440 GAAAATAACAATC
1 AAAAATAACAA-C
14453 AAAA
1 AAAA
14457 TAGTAAAAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
11 8 0.26
12 19 0.61
13 4 0.13
ACGTcount: A:0.69, C:0.17, G:0.06, T:0.08
Consensus pattern (12 bp):
AAAAATAACAAC
Found at i:14471 original size:21 final size:22
Alignment explanation
Indices: 14441--14510 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 22
14431 AAACAACACG
*
14441 AAAATAACAATCAAAATAGTAA
1 AAAACAACAATCAAAATAGTAA
* *
14463 AAAAC-AC-A--AAAACAGCAA
1 AAAACAACAATCAAAATAGTAA
14481 AAAACAACAATCAAAATAGTAA
1 AAAACAACAATCAAAATAGTAA
14503 AAAA-AACA
1 AAAACAACA
14511 GCACCAAAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
18 13 0.33
19 2 0.05
20 2 0.05
21 6 0.15
22 16 0.41
ACGTcount: A:0.71, C:0.14, G:0.04, T:0.10
Consensus pattern (22 bp):
AAAACAACAATCAAAATAGTAA
Found at i:14493 original size:40 final size:42
Alignment explanation
Indices: 14418--14524 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 42
14408 AATAGCAACA
* *
14418 AAAATAACAGCAAAAACAACACGAAAATAACAATCAAAATAGT
1 AAAA-AACAGCAAAAACAACACAAAAACAACAATCAAAATAGT
*
14461 AAAAAACA-CAAAAACAGCA-AAAAACAACAATCAAAATAGT
1 AAAAAACAGCAAAAACAACACAAAAACAACAATCAAAATAGT
14501 AAAAAAAACAGCACCAAAACAACA
1 --AAAAAACAGCA--AAAACAACA
14525 ATATAATTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
40 19 0.35
41 10 0.18
42 12 0.22
43 6 0.11
45 8 0.15
ACGTcount: A:0.68, C:0.19, G:0.06, T:0.07
Consensus pattern (42 bp):
AAAAAACAGCAAAAACAACACAAAAACAACAATCAAAATAGT
Found at i:18864 original size:27 final size:24
Alignment explanation
Indices: 18836--18881 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
18826 CATTGGAAAT
*
18836 GATGATAAGAAGAATGTACAGGAA
1 GATGATAAGAAGAATATACAGGAA
18860 GATGATAAGAAGAATATACAGG
1 GATGATAAGAAGAATATACAGG
18882 TATGCATGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.50, C:0.04, G:0.28, T:0.17
Consensus pattern (24 bp):
GATGATAAGAAGAATATACAGGAA
Found at i:34534 original size:30 final size:31
Alignment explanation
Indices: 34498--34558 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
34488 ATAAAAAATT
34498 TATT-AAATAAAA-ATACATAAA-ATTATTAAA
1 TATTAAAATAAAACA-ACATAAATATT-TTAAA
34528 TATTAAAATAAAACAACATAAATATTTTAAA
1 TATTAAAATAAAACAACATAAATATTTTAAA
34559 AAAATTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
30 4 0.14
31 20 0.71
32 4 0.14
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (31 bp):
TATTAAAATAAAACAACATAAATATTTTAAA
Found at i:40774 original size:2 final size:2
Alignment explanation
Indices: 40767--40794 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
40757 TTAAAATGAA
40767 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
40795 GTAAGTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:41293 original size:9 final size:8
Alignment explanation
Indices: 41262--41295 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
41252 TTATAATTTG
41262 TTTTTTAA
1 TTTTTTAA
41270 TTTTTTAA
1 TTTTTTAA
41278 TATTTTTATA
1 T-TTTTTA-A
41288 TTTTTTAA
1 TTTTTTAA
41296 ATTATTTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 10 0.42
9 12 0.50
10 2 0.08
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTTTAA
Found at i:45507 original size:26 final size:27
Alignment explanation
Indices: 45450--45503 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
45440 AAGCAATTAT
* *
45450 TATAAATTATTTGTAAAATTAATGATA
1 TATAAAATATTTGTAAAATTAATCATA
*
45477 TATAAAATATTT-TAAAATT-TTCATA
1 TATAAAATATTTGTAAAATTAATCATA
45502 TA
1 TA
45504 ATAATAACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 7 0.29
27 11 0.46
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (27 bp):
TATAAAATATTTGTAAAATTAATCATA
Found at i:46961 original size:2 final size:2
Alignment explanation
Indices: 46954--46978 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
46944 AACATCAAAA
46954 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
46979 ATATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:46983 original size:2 final size:2
Alignment explanation
Indices: 46978--47006 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
46968 TCTCTCTCTC
46978 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
47007 TATTACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:49081 original size:31 final size:31
Alignment explanation
Indices: 49014--49082 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 31
49004 GTAGTAATTG
* *
49014 AACTATTCAAAAGTTTTTATTTAAGTTACTA
1 AACTATTCAAAAGTTTTTATTTAAGTCACCA
49045 AACTATTCGAAAA-TTTTTATTTAAGTCACCA
1 AACTATTC-AAAAGTTTTTATTTAAGTCACCA
*
49076 GACTATT
1 AACTATT
49083 AAGTTTTCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 30 0.88
32 4 0.12
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (31 bp):
AACTATTCAAAAGTTTTTATTTAAGTCACCA
Found at i:56107 original size:113 final size:113
Alignment explanation
Indices: 55909--56135 Score: 427
Period size: 113 Copynumber: 2.0 Consensus size: 113
55899 TAATCTATAA
* *
55909 CGGTAAAAGTACCATAGAGGCCCCTGTACTAGGAGTCAGATTGCATTTTACCCCCTCTACTAAAA
1 CGGTAAAAGTACCATAAAGGCCCCTCTACTAGGAGTCAGATTGCATTTTACCCCCTCTACTAAAA
*
55974 AAATGAGCAAATTAGTCCCTGTACGTTAGATCAAAGAGCAAACTAATC
66 AAATGAGCAAATTAGTCCCTGTACGTTAGATCAAAAAGCAAACTAATC
56022 CGGTAAAAGTACCATAAAGGCCCCTCTACTAGGAGTCAGATTGCATTTTACCCCCTCTACTAAAA
1 CGGTAAAAGTACCATAAAGGCCCCTCTACTAGGAGTCAGATTGCATTTTACCCCCTCTACTAAAA
56087 AAATGAGCAAATTAGTCCCTGTACGTTAGATCAAAAAGCAAACTAATC
66 AAATGAGCAAATTAGTCCCTGTACGTTAGATCAAAAAGCAAACTAATC
56135 C
1 C
56136 TTTCAGTTAA
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 111 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (113 bp):
CGGTAAAAGTACCATAAAGGCCCCTCTACTAGGAGTCAGATTGCATTTTACCCCCTCTACTAAAA
AAATGAGCAAATTAGTCCCTGTACGTTAGATCAAAAAGCAAACTAATC
Found at i:57696 original size:305 final size:305
Alignment explanation
Indices: 57138--57748 Score: 1213
Period size: 305 Copynumber: 2.0 Consensus size: 305
57128 TAGCATGTTC
57138 ATGGTTATTTTTGTCGTCACTATTTTCAGTTTCCATCTCCATCACTTCAAGCTGCCTCAGTCATT
1 ATGGTTATTTTTGTCGTCACTATTTTCAGTTTCCATCTCCATCACTTCAAGCTGCCTCAGTCATT
57203 TTCATGATACATGATGTATACTTTGTCCGGCCTGCATCACCTCTAGTTCGTTATTTTCTACTATG
66 TTCATGATACATGATGTATACTTTGTCCGGCCTGCATCACCTCTAGTTCGTTATTTTCTACTATG
57268 TTTCCTTCACTACTCCCTAGATTTTCATATGACTTGCTTAGCACCAATCTATCATCCCTTACAAG
131 TTTCCTTCACTACTCCCTAGATTTTCATATGACTTGCTTAGCACCAATCTATCATCCCTTACAAG
57333 TCCACGTGACTACTGGCTATGACTTATGTTCGCATCTGTCAATGCTACTGCCAGATGTGTTCTAA
196 TCCACGTGACTACTGGCTATGACTTATGTTCGCATCTGTCAATGCTACTGCCAGATGTGTTCTAA
57398 GGCAACAGTGAAAGTAATGCAGATTGAAGAAAATTGAACACCATT
261 GGCAACAGTGAAAGTAATGCAGATTGAAGAAAATTGAACACCATT
57443 ATGGTTATTTTTGTCGTCACTATTTTCAGTTTCCATCTCCATCACTTCAAGCTGCCTCAGTCATT
1 ATGGTTATTTTTGTCGTCACTATTTTCAGTTTCCATCTCCATCACTTCAAGCTGCCTCAGTCATT
57508 TTCATGATACATGATGTATACTTTGTCCGGCCTGCATCACCTCTAGTTCGTTATTTTCTACTATG
66 TTCATGATACATGATGTATACTTTGTCCGGCCTGCATCACCTCTAGTTCGTTATTTTCTACTATG
57573 TTTCCTTCACTACTCCCTAGATTTTCATATGACTTGCTTAGCACCAATCTATCATCCCTTACAAG
131 TTTCCTTCACTACTCCCTAGATTTTCATATGACTTGCTTAGCACCAATCTATCATCCCTTACAAG
*
57638 TCCACGTGACTACTGGCTATGACTTATGTTCGCATCTGTCAATGCTACTGCTAGATGTGTTCTAA
196 TCCACGTGACTACTGGCTATGACTTATGTTCGCATCTGTCAATGCTACTGCCAGATGTGTTCTAA
57703 GGCAACAGTGAAAGTAATGCAGATTGAAGAAAATTGAACACCATT
261 GGCAACAGTGAAAGTAATGCAGATTGAAGAAAATTGAACACCATT
57748 A
1 A
57749 ACCGAATATA
Statistics
Matches: 305, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
305 305 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (305 bp):
ATGGTTATTTTTGTCGTCACTATTTTCAGTTTCCATCTCCATCACTTCAAGCTGCCTCAGTCATT
TTCATGATACATGATGTATACTTTGTCCGGCCTGCATCACCTCTAGTTCGTTATTTTCTACTATG
TTTCCTTCACTACTCCCTAGATTTTCATATGACTTGCTTAGCACCAATCTATCATCCCTTACAAG
TCCACGTGACTACTGGCTATGACTTATGTTCGCATCTGTCAATGCTACTGCCAGATGTGTTCTAA
GGCAACAGTGAAAGTAATGCAGATTGAAGAAAATTGAACACCATT
Found at i:67041 original size:31 final size:30
Alignment explanation
Indices: 66978--67042 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
66968 TTTTTATCAA
** * *
66978 AAAAATTATTTATTTTTTAATTTAATATAT
1 AAAAATTATTTATTTTTTAATCGAAAAAAT
67008 AAAAATTATATTATTTTTTAATCGAAAAAAT
1 AAAAATTAT-TTATTTTTTAATCGAAAAAAT
67039 AAAA
1 AAAA
67043 CACAATTCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (30 bp):
AAAAATTATTTATTTTTTAATCGAAAAAAT
Found at i:72359 original size:29 final size:29
Alignment explanation
Indices: 72283--72653 Score: 249
Period size: 29 Copynumber: 12.8 Consensus size: 29
72273 ACATCAGGGA
72283 GTAAAATGGTAATTTTTTGGAAGTGTCG-GG
1 GTAAAATGGTAA-TTTTTGGAAGT-TCGAGG
72313 GTCAAAAAT-G-AGATTTTTGGAAGTTCGAGG
1 GT--AAAATGGTA-ATTTTTGGAAGTTCGAGG
* * *
72343 GTAAAATGGTATTTTTTGG-A--CCGA-T
1 GTAAAATGGTAATTTTTGGAAGTTCGAGG
** * * * *
72368 AAAAAATGG-GACTTTTGGAAGTTTGGGG
1 GTAAAATGGTAATTTTTGGAAGTTCGAGG
72396 GTAAAATGGTAATTTTTGGAAGTTTC--GG
1 GTAAAATGGTAATTTTTGGAAG-TTCGAGG
**
72424 GTCAAAGATGG-AATTTTCAGAAGTTCGAGG
1 GT-AAA-ATGGTAATTTTTGGAAGTTCGAGG
*
72454 GTAAAATGGTAATTTTAGGAAGTTTCGA-G
1 GTAAAATGGTAATTTTTGGAAG-TTCGAGG
* * *
72483 GTCAAAAATGG-GATTTTTTGAAGTTTGAGG
1 GT--AAAATGGTAATTTTTGGAAGTTCGAGG
*
72513 GTAAAATGGTAA-TTTTGGAAGGTT--TGG
1 GTAAAATGGTAATTTTTGGAA-GTTCGAGG
* *
72540 GTCAAAAATGG-GATTTTTGGAAGTTCGGGG
1 GT--AAAATGGTAATTTTTGGAAGTTCGAGG
*
72570 GAAAAATGGTAATTTTTGGAAGATTCG-GG
1 GTAAAATGGTAATTTTTGGAAG-TTCGAGG
* * *
72599 GTCAAAAATGG-AATATTTGGAAATTTGAGG
1 GT--AAAATGGTAATTTTTGGAAGTTCGAGG
72629 GTAAAATGGTAATTTTTGGATAGTT
1 GTAAAATGGTAATTTTTGGA-AGTT
72654 TAGGGACCTT
Statistics
Matches: 268, Mismatches: 38, Indels: 70
0.71 0.10 0.19
Matches are distributed among these distances:
24 6 0.02
25 8 0.03
26 3 0.01
27 5 0.02
28 56 0.21
29 99 0.37
30 70 0.26
31 16 0.06
32 5 0.02
ACGTcount: A:0.32, C:0.04, G:0.30, T:0.34
Consensus pattern (29 bp):
GTAAAATGGTAATTTTTGGAAGTTCGAGG
Found at i:72515 original size:59 final size:58
Alignment explanation
Indices: 72283--72654 Score: 434
Period size: 59 Copynumber: 6.4 Consensus size: 58
72273 ACATCAGGGA
* *
72283 GTAAAATGGTAATTTTTTGGAAGTGTCGGGGTCAAAAATGAGATTTTTGGAAGTTCGAGG
1 GTAAAATGGTAA-TTTTTGGAAGTTTC-GGGTCAAAAATGGGATTTTTGGAAGTTCGAGG
* * * * * * *
72343 GTAAAATGGTATTTTTTGG-A----CCGATAAAAAATGGGACTTTTGGAAGTTTGGGG
1 GTAAAATGGTAATTTTTGGAAGTTTCGGGTCAAAAATGGGATTTTTGGAAGTTCGAGG
* * **
72396 GTAAAATGGTAATTTTTGGAAGTTTCGGGTCAAAGATGGAATTTTCAGAAGTTCGAGG
1 GTAAAATGGTAATTTTTGGAAGTTTCGGGTCAAAAATGGGATTTTTGGAAGTTCGAGG
* * *
72454 GTAAAATGGTAATTTTAGGAAGTTTCGAGGTCAAAAATGGGATTTTTTGAAGTTTGAGG
1 GTAAAATGGTAATTTTTGGAAGTTTCG-GGTCAAAAATGGGATTTTTGGAAGTTCGAGG
*
72513 GTAAAATGGTAA-TTTTGGAAGGTTT-GGGTCAAAAATGGGATTTTTGGAAGTTCGGGG
1 GTAAAATGGTAATTTTTGGAA-GTTTCGGGTCAAAAATGGGATTTTTGGAAGTTCGAGG
* * * * * *
72570 GAAAAATGGTAATTTTTGGAAGATTCGGGGTCAAAAATGGAATATTTGGAAATTTGAGG
1 GTAAAATGGTAATTTTTGGAAGTTTC-GGGTCAAAAATGGGATTTTTGGAAGTTCGAGG
72629 GTAAAATGGTAATTTTTGGATAGTTT
1 GTAAAATGGTAATTTTTGGA-AGTTT
72655 AGGGACCTTC
Statistics
Matches: 263, Mismatches: 38, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
53 43 0.16
54 2 0.01
57 42 0.16
58 66 0.25
59 95 0.36
60 15 0.06
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.34
Consensus pattern (58 bp):
GTAAAATGGTAATTTTTGGAAGTTTCGGGTCAAAAATGGGATTTTTGGAAGTTCGAGG
Found at i:72577 original size:116 final size:116
Alignment explanation
Indices: 72283--72648 Score: 458
Period size: 116 Copynumber: 3.2 Consensus size: 116
72273 ACATCAGGGA
** *
72283 GTAAAATGGTAATTTTTTGGAAGTGTCGGGGTCAAAAATGAGATTTTTGGAAGTTCGAGGGTAAA
1 GTAAAATGGTAA-TTTTTGGAAG-GTTTGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAA
* * * * *
72348 ATGGTATTTTTTGG-A--CCGA--TAAAAAATGGGACTTTTGGAAGTTTGGGG
64 ATGGTAATTTTTGGAAGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTTGAGG
* * **
72396 GTAAAATGGTAATTTTTGGAA-GTTTCGGGTCAAAGATGGAATTTTCAGAAGTTCGAGGGTAAAA
1 GTAAAATGGTAATTTTTGGAAGGTTT-GGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAA
* *
72460 TGGTAATTTTAGGAAGTTTCGAGGTCAAAAATGGGATTTTTTGAAGTTTGAGG
65 TGGTAATTTTTGGAAG-TTCGAGGTCAAAAATGGGATTTTTGGAAGTTTGAGG
* *
72513 GTAAAATGGTAA-TTTTGGAAGGTTTGGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGAAAAAT
1 GTAAAATGGTAATTTTTGGAAGGTTTGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAAT
* * * *
72577 GGTAATTTTTGGAAGATTCGGGGTCAAAAATGGAATATTTGGAAATTTGAGG
66 GGTAATTTTTGGAAG-TTCGAGGTCAAAAATGGGATTTTTGGAAGTTTGAGG
72629 GTAAAATGGTAATTTTTGGA
1 GTAAAATGGTAATTTTTGGA
72649 TAGTTTAGGG
Statistics
Matches: 217, Mismatches: 27, Indels: 14
0.84 0.10 0.05
Matches are distributed among these distances:
110 2 0.01
111 44 0.20
112 10 0.05
113 12 0.06
115 3 0.01
116 98 0.45
117 48 0.22
ACGTcount: A:0.32, C:0.04, G:0.30, T:0.34
Consensus pattern (116 bp):
GTAAAATGGTAATTTTTGGAAGGTTTGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAAT
GGTAATTTTTGGAAGTTCGAGGTCAAAAATGGGATTTTTGGAAGTTTGAGG
Found at i:74430 original size:6 final size:6
Alignment explanation
Indices: 74419--74462 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
74409 AATTTCGAAA
* *
74419 TTAAAT TTAAAT TTAAAT TTAGA- TT-AAT TTAAAT TTAAAA TTAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAA
74463 TTAAAAAGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
4 1 0.03
5 4 0.12
6 28 0.85
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (6 bp):
TTAAAT
Found at i:74448 original size:22 final size:21
Alignment explanation
Indices: 74417--74466 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
74407 TTAATTTCGA
*
74417 AATTAAATTTAAATTTAAATTT
1 AATT-AATTTAAATTTAAAATT
74439 AGATTAATTTAAATTTAAAATT
1 A-ATTAATTTAAATTTAAAATT
74461 AATTAA
1 AATTAA
74467 AAAGAGGCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 5 0.19
22 18 0.69
23 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
AATTAATTTAAATTTAAAATT
Found at i:74467 original size:16 final size:16
Alignment explanation
Indices: 74428--74464 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
74418 ATTAAATTTA
*
74428 AATTTAAATTTAGATT
1 AATTTAAATTTAAATT
74444 AATTTAAATTTAAAATT
1 AATTTAAATTT-AAATT
74461 AATT
1 AATT
74465 AAAAAGAGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
AATTTAAATTTAAATT
Found at i:91722 original size:29 final size:28
Alignment explanation
Indices: 91686--91741 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 28
91676 CGAATAAAAC
91686 TTTTTTTTTTTAAATT-GGGAAAATAAGG
1 TTTTTTTTTTTAAATTAGGG-AAATAAGG
91714 TTTTATTTTTTTAAATTAGGGAAATAAG
1 TTTT-TTTTTTTAAATTAGGGAAATAAG
91742 TTAAAATGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 4 0.15
29 19 0.73
30 3 0.12
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (28 bp):
TTTTTTTTTTTAAATTAGGGAAATAAGG
Found at i:96844 original size:153 final size:153
Alignment explanation
Indices: 96584--96894 Score: 568
Period size: 153 Copynumber: 2.0 Consensus size: 153
96574 TATGTGTGCC
96584 TCTTATTATTTGTCGGTATAATTGTTAATTCTACGTAATTTTCTTTTCATATATTGTTATCTGAC
1 TCTTATTATTTGTCGGTATAATTGTTAATTCTACGTAATTTTCTTTTCATATATTGTTATCTGAC
* *
96649 ACCATAAAGAGGTCTACTCTTATTTCGATTATACATGTTGCTACTATGATAGTTGCGAGAATTCT
66 ACCATAAAGAGGCCTACTCTTATTTCGATTATACATGTTGCTACTATGATAGTTACGAGAATTCT
96714 TGTAGTATTATTAGGAGTTGTTT
131 TGTAGTATTATTAGGAGTTGTTT
* * *
96737 TCTTATTATTTGTCGGTATAATTGTTGATTCTACGTAATTTTTTTTTCATATATTGTTATCTGAT
1 TCTTATTATTTGTCGGTATAATTGTTAATTCTACGTAATTTTCTTTTCATATATTGTTATCTGAC
*
96802 ACCATAAAGAGGCCTACTCTTATTTCGATTATACATGTTGCTACTATGATAGTTACGAGAATTTT
66 ACCATAAAGAGGCCTACTCTTATTTCGATTATACATGTTGCTACTATGATAGTTACGAGAATTCT
96867 TGTAGTATTATTAGGAGTTGTTT
131 TGTAGTATTATTAGGAGTTGTTT
96890 TCTTA
1 TCTTA
96895 CTTTAGCTCT
Statistics
Matches: 152, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
153 152 1.00
ACGTcount: A:0.25, C:0.12, G:0.15, T:0.47
Consensus pattern (153 bp):
TCTTATTATTTGTCGGTATAATTGTTAATTCTACGTAATTTTCTTTTCATATATTGTTATCTGAC
ACCATAAAGAGGCCTACTCTTATTTCGATTATACATGTTGCTACTATGATAGTTACGAGAATTCT
TGTAGTATTATTAGGAGTTGTTT
Found at i:103566 original size:39 final size:39
Alignment explanation
Indices: 103512--103592 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
103502 TCAAGTTACT
103512 AAGTTATGATGGTGAGGGATGCTTGCTCTGGGGATTTTC
1 AAGTTATGATGGTGAGGGATGCTTGCTCTGGGGATTTTC
*
103551 AAGTTATGATGGTGAGGGATGCTTGTTCTGGGGATTTTC
1 AAGTTATGATGGTGAGGGATGCTTGCTCTGGGGATTTTC
103590 AAG
1 AAG
103593 CAGAAAAATG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.20, C:0.09, G:0.36, T:0.36
Consensus pattern (39 bp):
AAGTTATGATGGTGAGGGATGCTTGCTCTGGGGATTTTC
Found at i:108283 original size:27 final size:26
Alignment explanation
Indices: 108253--108304 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
108243 TGTCAAAATA
* * *
108253 TTTTCCTTATTTTAACTATAAATTTCT
1 TTTTCATTACTTTAAC-ACAAATTTCT
108280 TTTTCATTACTTTAACACAAATTTC
1 TTTTCATTACTTTAACACAAATTTC
108305 AGAAATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (26 bp):
TTTTCATTACTTTAACACAAATTTCT
Found at i:108378 original size:21 final size:21
Alignment explanation
Indices: 108354--108399 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
108344 AATTGAATAG
*
108354 ATAATTTCTTAAA-ATTTTTTA
1 ATAATTT-TAAAACATTTTTTA
*
108375 ATAATTTTAAAACATTTTTTT
1 ATAATTTTAAAACATTTTTTA
108396 ATAA
1 ATAA
108400 AATAAACATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (21 bp):
ATAATTTTAAAACATTTTTTA
Found at i:110745 original size:21 final size:21
Alignment explanation
Indices: 110696--110747 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
110686 GGGAGCCAAG
**
110696 CTTGAGTAT-CCTAATTCCTGG
1 CTTGAGT-TGCCTAATTCCTAA
*
110717 CTTAAGTTGCCTAATTCCTAA
1 CTTGAGTTGCCTAATTCCTAA
110738 CTTGAGTTGC
1 CTTGAGTTGC
110748 TCGTGAACCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 1 0.04
21 25 0.96
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
CTTGAGTTGCCTAATTCCTAA
Found at i:119470 original size:25 final size:24
Alignment explanation
Indices: 119437--119488 Score: 79
Period size: 23 Copynumber: 2.1 Consensus size: 24
119427 GATTGAGGTT
119437 AAACATTAACTCGATACATTTTATAG
1 AAACATTAA-T-GATACATTTTATAG
119463 AAAC-TTAATGATACATTTTATAG
1 AAACATTAATGATACATTTTATAG
119486 AAA
1 AAA
119489 GTATCTCGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 17 0.65
24 1 0.04
25 4 0.15
26 4 0.15
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.35
Consensus pattern (24 bp):
AAACATTAATGATACATTTTATAG
Found at i:125394 original size:31 final size:31
Alignment explanation
Indices: 125332--125394 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
125322 TATAAAACCA
** *
125332 TCACTAAACAATTGGAAACTTTTCATTTAAG
1 TCACTAAACAATTCCAAACTTTTCATGTAAG
* * *
125363 TCACTAAACTATTCCAAAGTTTTTATGTAAG
1 TCACTAAACAATTCCAAACTTTTCATGTAAG
125394 T
1 T
125395 TATTGGGCTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.38
Consensus pattern (31 bp):
TCACTAAACAATTCCAAACTTTTCATGTAAG
Found at i:127922 original size:26 final size:26
Alignment explanation
Indices: 127886--127940 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
127876 TCAACTTTCA
*
127886 ATAAAATAAAAATA-TATTTTAATTTT
1 ATAAAATAAAAATATTAATTT-ATTTT
127912 ATAAAATAAAAATATTAATTTATTTT
1 ATAAAATAAAAATATTAATTTATTTT
127938 ATA
1 ATA
127941 TATGAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (26 bp):
ATAAAATAAAAATATTAATTTATTTT
Found at i:130459 original size:23 final size:25
Alignment explanation
Indices: 130420--130470 Score: 70
Period size: 23 Copynumber: 2.1 Consensus size: 25
130410 CTTTTTTTTT
* *
130420 TAAATTTTATTTTTTTTATATTGAA
1 TAAATTTTATTTTTTTTAAATAGAA
130445 TAAA-TTT-TTTTTTTTAAATAGAA
1 TAAATTTTATTTTTTTTAAATAGAA
130468 TAA
1 TAA
130471 TGTAACCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 17 0.71
24 3 0.12
25 4 0.17
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (25 bp):
TAAATTTTATTTTTTTTAAATAGAA
Found at i:130464 original size:18 final size:18
Alignment explanation
Indices: 130411--130464 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
130401 AAAAAAAAAC
**
130411 TTTTTTTTTTAAATTTTAT
1 TTTTTTTTTTAAA-TAAAT
*
130430 TTTTTTTATATTGAATAAAT
1 TTTTTTT-T-TTAAATAAAT
130450 TTTTTTTTTTAAATA
1 TTTTTTTTTTAAATA
130465 GAATAATGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
18 6 0.21
19 8 0.28
20 11 0.38
21 4 0.14
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTTTTTTTTAAATAAAT
Found at i:131372 original size:61 final size:61
Alignment explanation
Indices: 131275--131397 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
131265 AGAACAAAAT
131275 TTTGACATAATAATAAAGGTTTGGTCATTGGCCTTGTTTGGTAAGAAAGGAACTCTTATTA
1 TTTGACATAATAATAAAGGTTTGGTCATTGGCCTTGTTTGGTAAGAAAGGAACTCTTATTA
*
131336 TTTGACATAATAATAAAGGTTTGGTCATTGGTCTTGTTTGGTAAGAAAGGAACTCTTATTA
1 TTTGACATAATAATAAAGGTTTGGTCATTGGCCTTGTTTGGTAAGAAAGGAACTCTTATTA
131397 T
1 T
131398 GGAACAAACA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (61 bp):
TTTGACATAATAATAAAGGTTTGGTCATTGGCCTTGTTTGGTAAGAAAGGAACTCTTATTA
Found at i:134448 original size:15 final size:15
Alignment explanation
Indices: 134400--134449 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
134390 ATGGATGTGC
*
134400 TTCTTCTTCTTCTTT
1 TTCTTTTTCTTCTTT
*
134415 TTCATTTTCTTCTTT
1 TTCTTTTTCTTCTTT
*
134430 TTCTTTTTGTTCTTT
1 TTCTTTTTCTTCTTT
134445 TTCTT
1 TTCTT
134450 CCACCACCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (15 bp):
TTCTTTTTCTTCTTT
Found at i:140073 original size:146 final size:146
Alignment explanation
Indices: 139809--140097 Score: 533
Period size: 146 Copynumber: 2.0 Consensus size: 146
139799 TTGAACTGTA
* ***
139809 TTCTTCACTAGGTCTCACTGGTACACCTTGGTTTTGTATATGCACCCATTTGTCTTGAAACAAGT
1 TTCTTCACAAGGTCTCACTGGTACACCTTAACTTTGTATATGCACCCATTTGTCTTGAAACAAGT
*
139874 AAATCAACACAATCACAGTGATCTCAACTGTAAAAGGTATGGTCCAAAGCTTTGTACTCTTTGAT
66 AAATCAACACAATCACAGTGATCTCAACTGTAAAAGCTATGGTCCAAAGCTTTGTACTCTTTGAT
139939 GTCTTGTCATGATGTG
131 GTCTTGTCATGATGTG
139955 TTCTTCACAAGGTCTCACTGGTACACCTTAACTTTGTATATGCACCCATTTGTCTTGAAACAAGT
1 TTCTTCACAAGGTCTCACTGGTACACCTTAACTTTGTATATGCACCCATTTGTCTTGAAACAAGT
140020 AAATCAACACAATCACAGTGATCTCAACTGTAAAAGCTATGGTCCAAAGCTTTGTACTCTTTGAT
66 AAATCAACACAATCACAGTGATCTCAACTGTAAAAGCTATGGTCCAAAGCTTTGTACTCTTTGAT
140085 GTCTTGTCATGAT
131 GTCTTGTCATGAT
140098 ATGCTCCCAA
Statistics
Matches: 138, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
146 138 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.34
Consensus pattern (146 bp):
TTCTTCACAAGGTCTCACTGGTACACCTTAACTTTGTATATGCACCCATTTGTCTTGAAACAAGT
AAATCAACACAATCACAGTGATCTCAACTGTAAAAGCTATGGTCCAAAGCTTTGTACTCTTTGAT
GTCTTGTCATGATGTG
Done.