Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009566.1 Kokia drynarioides strain JFW-HI SEQ_124279, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3135
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30


Found at i:1008 original size:45 final size:45

Alignment explanation


    Indices: 872--997  Score: 191
    Period size: 45  Copynumber: 2.8  Consensus size: 45

        862 CCATAGCTCA

                                                         
        872 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                     *             *                     
        917 TCAAGCCAATGATATCAGCCTCAATTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                   *           *  *              
        962 TCAATG-GAAGGATATCAGGCTGAGTTTGACGAGCCA
          1 TCAA-GCCAAGGATATCAGCCTCAGTTTGACGAGCCA

        998 TCACGATACT


Statistics
Matches: 73,  Mismatches: 7, Indels: 2
        0.89            0.09        0.02

Matches are distributed among these distances:
  45   72  0.99
  46    1  0.01

ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
Done.