genome.fa.s9568.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009568.1 Kokia drynarioides strain JFW-HI SEQ_124282, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87108

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3474--3519	25	1.9	23	86	8	65	56	4	4	34	1.39
4907--4972	6	11.3	6	79	12	66	42	0	6	51	1.26
4906--4961	11	5.0	11	78	4	58	39	0	8	51	1.33
4906--4974	17	4.0	17	85	7	86	43	0	7	49	1.30
4911--4976	23	3.0	22	80	10	64	43	0	6	50	1.27
4927--4980	17	3.2	17	82	12	67	51	0	3	44	1.19
4927--4980	18	3.2	16	82	7	63	51	0	3	44	1.19
6652--7068	29	14.2	30	73	13	298	34	27	5	33	1.79
6652--7068	59	7.1	58	82	5	421	34	27	5	33	1.79
6652--7128	59	8.1	60	80	6	294	34	26	5	33	1.79
15393--15777	201	1.9	201	89	0	590	33	17	24	24	1.96
15603--15925	148	2.2	149	90	2	504	33	18	23	24	1.97
15819--16109	134	2.2	134	87	0	420	34	16	24	24	1.95
16503--16569	17	3.9	17	82	7	64	46	0	5	47	1.27
16506--16571	23	3.0	22	80	10	64	45	0	6	48	1.27
16522--16575	17	3.2	17	82	12	67	51	0	3	44	1.19
16522--16575	18	3.2	16	82	7	63	51	0	3	44	1.19
18459--18923	59	7.9	59	81	7	434	35	26	3	34	1.73
18459--18861	29	13.8	28	72	12	242	36	27	3	33	1.73
18460--18923	30	15.8	30	70	19	295	35	26	3	34	1.74
18819--18935	61	1.9	61	92	0	198	30	23	5	40	1.78
18845--18930	29	2.8	29	70	24	70	31	23	5	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20593--20700	54	2.0	54	98	0	207	39	1	13	44	1.55
20609--20692	26	3.2	26	63	24	66	40	1	14	44	1.53
21985--22116	20	6.6	20	76	7	117	12	32	23	31	1.91
21985--22116	40	3.3	40	80	5	151	12	32	23	31	1.91
22861--23496	321	2.0	321	92	0	1056	24	19	24	31	1.98
29369--29412	22	2.0	22	100	0	88	54	4	9	31	1.52
29750--29964	108	2.0	111	89	2	337	46	3	11	38	1.57
31415--31478	29	2.2	30	83	8	78	46	3	1	48	1.27
37426--37467	20	2.2	19	87	8	59	21	0	4	73	1.01
37433--37475	9	4.4	10	83	13	54	25	0	2	72	0.97
38578--38611	16	2.1	16	89	10	52	38	5	0	55	1.24
51217--51542	160	2.1	158	91	1	526	35	12	14	37	1.85
51580--51615	16	2.2	16	95	0	63	50	0	2	47	1.15
51896--52110	100	2.2	97	86	9	285	37	2	11	48	1.54
58204--58244	21	1.9	22	85	14	59	31	12	12	43	1.79
67517--67587	21	3.4	21	86	0	79	25	22	14	38	1.92
67536--67591	21	2.7	21	91	0	85	25	23	16	35	1.94
67937--68043	6	18.0	6	70	12	78	44	2	2	49	1.31
67937--68021	17	4.9	17	81	7	91	43	1	3	51	1.26
69882--70258	59	6.4	58	75	12	281	32	26	3	36	1.75
69882--70201	117	2.7	118	80	6	346	32	26	3	36	1.75
69913--70258	89	3.9	87	80	10	355	32	26	3	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69882--70258	30	12.7	31	76	10	278	32	26	3	36	1.75
80555--80596	20	2.1	20	100	0	84	9	9	26	54	1.63

Tables:   1

The End!