Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009570.1 Kokia drynarioides strain JFW-HI SEQ_124284, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1886
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28


Found at i:1299 original size:29 final size:29

Alignment explanation


    Indices: 1267--1334  Score: 91
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       1257 TCATGTGCTA

                  *               *      
       1267 GCCCGTTTGTGACACACGGCATGTCACAC
          1 GCCCGTGTGTGACACACGGCATATCACAC

                                *        
       1296 GCCCGTGTGTGACACACGGCCTATCACAC
          1 GCCCGTGTGTGACACACGGCATATCACAC

            *   *     
       1325 TCCCATGTGT
          1 GCCCGTGTGT

       1335 CTACCTCGTG


Statistics
Matches: 34,  Mismatches: 5, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  29   34  1.00

ACGTcount: A:0.19, C:0.35, G:0.24, T:0.22


Consensus pattern (29 bp):   
GCCCGTGTGTGACACACGGCATATCACAC

Done.