genome.fa.s9571.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009571.1 Kokia drynarioides strain JFW-HI SEQ_124285, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144364

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--139	61	2.2	61	89	1	198	24	12	14	48	1.79
2310--2382	34	2.1	34	84	0	92	28	15	6	49	1.70
9773--9813	18	2.2	19	91	4	66	34	39	19	7	1.80
11040--11109	29	2.5	28	76	4	70	45	11	0	42	1.40
13777--13865	27	3.3	27	85	1	106	28	17	24	29	1.98
13903--13967	27	2.4	27	78	0	76	24	16	24	33	1.96
17839--17941	27	3.8	27	92	0	143	31	16	21	31	1.95
17839--17989	54	2.7	55	80	6	164	27	15	23	32	1.96
17994--18045	27	1.9	27	88	7	79	28	19	19	32	1.96
18006--18079	27	2.7	27	81	8	69	35	14	14	35	1.88
20480--20517	19	2.0	19	85	10	51	65	18	5	10	1.41
21389--21423	14	2.4	14	90	4	52	22	0	2	74	0.95
25894--25944	13	3.8	13	76	10	50	64	0	5	29	1.17
27714--27925	101	2.1	102	85	5	279	25	19	18	35	1.95
27760--27914	51	3.1	49	67	9	123	26	18	20	35	1.95
29440--29578	68	2.0	68	91	0	224	23	7	15	53	1.67
31575--31851	92	3.0	92	91	2	448	30	20	20	28	1.97
37547--37594	17	2.8	17	84	6	53	18	14	12	54	1.71
38391--38532	64	2.2	64	94	2	250	35	11	20	32	1.89
40500--40571	36	2.0	36	100	0	144	33	27	11	27	1.91
41472--41544	37	2.0	37	97	0	137	56	9	8	26	1.59
55815--56002	71	2.5	76	84	7	228	43	3	22	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60724--60834	38	3.0	38	76	2	100	30	9	24	35	1.88
60805--60902	36	2.6	37	77	4	108	25	15	28	30	1.96
62048--62094	17	2.8	17	90	0	67	48	10	21	19	1.78
78296--78321	5	5.2	5	100	0	52	23	0	0	76	0.78
78370--78485	60	1.9	61	84	5	155	33	5	13	47	1.65
79492--79627	41	3.3	38	76	18	98	70	3	5	20	1.22
79559--79645	15	5.9	14	70	15	52	72	3	4	19	1.17
79530--79652	16	7.8	16	67	21	64	73	4	4	18	1.16
79623--79689	21	3.0	20	78	20	62	74	5	1	17	1.09
79443--79661	4	51.5	4	68	21	51	70	3	4	21	1.21
79484--79682	12	17.2	11	66	22	63	71	4	4	20	1.19
80546--80688	49	2.9	50	81	3	155	18	20	19	40	1.92
80697--80828	49	2.7	49	80	4	149	17	19	18	44	1.87
80766--80869	49	2.1	49	80	7	122	18	16	19	46	1.85
80895--81063	88	1.9	87	83	5	216	18	23	18	39	1.92
80982--81161	49	3.7	49	76	1	155	20	18	17	43	1.88
88438--88617	93	1.9	93	82	4	220	20	22	17	39	1.92
88531--88698	49	3.4	49	80	1	185	20	26	14	38	1.92
89892--90050	79	2.0	79	97	0	300	22	23	23	30	1.99
115852--115896	22	2.0	21	84	16	56	62	13	0	24	1.31
116332--116452	4	29.0	4	68	17	61	66	4	4	23	1.29
116315--116439	56	2.2	59	81	8	141	66	4	4	24	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116231--116484	97	2.6	96	79	13	247	64	6	5	23	1.38
116308--116496	101	1.9	97	87	6	272	64	5	5	24	1.37
116694--116769	26	3.1	25	73	21	63	40	17	9	32	1.81
140232--140256	13	1.9	13	100	0	50	48	12	16	24	1.79

Tables:   1

The End!