Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009572.1 Kokia drynarioides strain JFW-HI SEQ_124286, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58032
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Warning! 10 characters in sequence are not A, C, G, or T
Found at i:1944 original size:36 final size:36
Alignment explanation
Indices: 1844--1944 Score: 141
Period size: 36 Copynumber: 2.8 Consensus size: 36
1834 TCATTATTTG
* *
1844 TTTTACT-CTCTATTGACCCAAAGGTCATAATGCTCG
1 TTTTACTCCT-TATTGACCCAAAGGTCATGATGCTCA
* * *
1880 TTTTACTCCTTATTAACCCAGAGGTCATGATTCTCA
1 TTTTACTCCTTATTGACCCAAAGGTCATGATGCTCA
1916 TTTTACTCCTTATTGACCCAAAGGTCATG
1 TTTTACTCCTTATTGACCCAAAGGTCATG
1945 CCTGTTACCA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
36 55 0.96
37 2 0.04
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.38
Consensus pattern (36 bp):
TTTTACTCCTTATTGACCCAAAGGTCATGATGCTCA
Found at i:4523 original size:14 final size:14
Alignment explanation
Indices: 4492--4543 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
4482 TATATGTAAA
*
4492 TATAAATTTTAAAAC
1 TATAAA-TTTAATAC
*
4507 TATAAATTTAATTC
1 TATAAATTTAATAC
4521 TAT-AATTTAATAAC
1 TATAAATTTAAT-AC
*
4535 TATTAATTT
1 TATAAATTT
4544 TAAATTTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
13 8 0.25
14 13 0.41
15 11 0.34
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (14 bp):
TATAAATTTAATAC
Found at i:5048 original size:56 final size:56
Alignment explanation
Indices: 4985--5096 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
4975 GAAAATGATC
4985 CCAACACAGAACCCCCAAAAAGAAAAAGTTAAATCGCCATTGCAAATGTAATGAAT
1 CCAACACAGAACCCCCAAAAAGAAAAAGTTAAATCGCCATTGCAAATGTAATGAAT
*
5041 CCAACACAGAACCCCCAAAAAGAAAAAGTTAAATCGCCGTTGCAAATGTAATGAAT
1 CCAACACAGAACCCCCAAAAAGAAAAAGTTAAATCGCCATTGCAAATGTAATGAAT
5097 TTTATTACAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.47, C:0.23, G:0.13, T:0.16
Consensus pattern (56 bp):
CCAACACAGAACCCCCAAAAAGAAAAAGTTAAATCGCCATTGCAAATGTAATGAAT
Found at i:5578 original size:2 final size:2
Alignment explanation
Indices: 5571--5614 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
5561 GTCCAAATAG
5571 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5613 AT
1 AT
5615 GACTGAACCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9021 original size:28 final size:28
Alignment explanation
Indices: 8978--9035 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
8968 AGCCTATTAG
* *
8978 GCACAAAGCTCGATTACAGCGGCACAAA
1 GCACAAAGCCCAATTACAGCGGCACAAA
* *
9006 GCACAAAGCCCAATTACATCGGCACGAA
1 GCACAAAGCCCAATTACAGCGGCACAAA
9034 GC
1 GC
9036 CTACTAGGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.38, C:0.31, G:0.21, T:0.10
Consensus pattern (28 bp):
GCACAAAGCCCAATTACAGCGGCACAAA
Found at i:20073 original size:18 final size:17
Alignment explanation
Indices: 20050--20103 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
20040 TTTTCCCCAT
20050 TTTTTCATCTAACACCA
1 TTTTTCATCTAACACCA
* *
20067 CTTTTTCTTCT--GACCA
1 -TTTTTCATCTAACACCA
20083 TTTTTCCATCTAACA-CA
1 TTTTT-CATCTAACACCA
20100 TTTT
1 TTTT
20104 AAGTTCCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
15 5 0.17
16 8 0.28
17 6 0.21
18 10 0.34
ACGTcount: A:0.22, C:0.28, G:0.02, T:0.48
Consensus pattern (17 bp):
TTTTTCATCTAACACCA
Found at i:20311 original size:99 final size:99
Alignment explanation
Indices: 20139--20333 Score: 318
Period size: 99 Copynumber: 2.0 Consensus size: 99
20129 TAAACCAAAC
* *
20139 CATGGCTACTTCTCCACTTGGATTCTAAACCAAACCATGGGTTCTTCTTCTTCCATCACTCTCCC
1 CATGGCTACTTCTCCACTTGGATTCTAAACCAAACCATGGCTTCTTCTTCTTCCATCACTCTCAC
* *
20204 AACTCTTCAAGGTTTTCTATTTCAATCTCATAAT
66 AACCCTTCAAGGTTCTCTATTTCAATCTCATAAT
* * *
20238 CATGGCTACTTCTCCACTTGGATTCTGAATCAAATCATGGCTTCTTCTTCTTCCATCACTCTCAC
1 CATGGCTACTTCTCCACTTGGATTCTAAACCAAACCATGGCTTCTTCTTCTTCCATCACTCTCAC
*
20303 AACCCTTCAATGTTCTCTATTTCAATCTCAT
66 AACCCTTCAAGGTTCTCTATTTCAATCTCAT
20334 TTCTTAAGAA
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
99 88 1.00
ACGTcount: A:0.23, C:0.31, G:0.09, T:0.38
Consensus pattern (99 bp):
CATGGCTACTTCTCCACTTGGATTCTAAACCAAACCATGGCTTCTTCTTCTTCCATCACTCTCAC
AACCCTTCAAGGTTCTCTATTTCAATCTCATAAT
Found at i:20966 original size:29 final size:30
Alignment explanation
Indices: 20928--21006 Score: 119
Period size: 29 Copynumber: 2.7 Consensus size: 30
20918 TTAAAATATT
*
20928 AAAATAATTTTAATAATTTTCTA-TTTTAA
1 AAAATAATTTTAATAATTTTATATTTTTAA
20957 AAAATAATTTTAATAATTTTATATTTTTTAA
1 AAAATAATTTTAATAATTTTATA-TTTTTAA
20988 AAAA-AA-TTTAATAATTTTA
1 AAAATAATTTTAATAATTTTA
21007 AAGTCATTTG
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
29 35 0.74
30 2 0.04
31 10 0.21
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (30 bp):
AAAATAATTTTAATAATTTTATATTTTTAA
Found at i:22185 original size:31 final size:31
Alignment explanation
Indices: 22147--22216 Score: 106
Period size: 31 Copynumber: 2.2 Consensus size: 31
22137 TATCAAATAA
*
22147 TTTTTCTTCTCTCAATT-TCTCCCAACATCTT
1 TTTTTCTTCTCTC-ATTATCTCCCAACATATT
22178 TTTTTCTTCTCTCATTATCTCCCAACATATT
1 TTTTTCTTCTCTCATTATCTCCCAACATATT
22209 TTTCTTCT
1 TTT-TTCT
22217 CATTTTCTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
30 3 0.08
31 29 0.81
32 4 0.11
ACGTcount: A:0.16, C:0.30, G:0.00, T:0.54
Consensus pattern (31 bp):
TTTTTCTTCTCTCATTATCTCCCAACATATT
Found at i:23735 original size:48 final size:48
Alignment explanation
Indices: 23634--23745 Score: 127
Period size: 48 Copynumber: 2.3 Consensus size: 48
23624 ACACAAACGC
* * * *
23634 TTGTTTTATCATTTCAGTCATCAGGCTTTCATCAACTCATGCAAATAA
1 TTGTTTTATCATCTCAATCATCAAGCTTTCATCAACTCATGCAAAGAA
* * * * *
23682 ATGTTTTATCATCTCAATTATCAAGC-TTCTATCAACTCATGTAGAGAT
1 TTGTTTTATCATCTCAATCATCAAGCTTTC-ATCAACTCATGCAAAGAA
23730 TTGTTTTATCATCTCA
1 TTGTTTTATCATCTCA
23746 GTCTTCCGTC
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
47 3 0.06
48 50 0.94
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.42
Consensus pattern (48 bp):
TTGTTTTATCATCTCAATCATCAAGCTTTCATCAACTCATGCAAAGAA
Found at i:24565 original size:16 final size:16
Alignment explanation
Indices: 24526--24581 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 16
24516 AATCAATAAG
*
24526 ACTGTAATGGAATAGG
1 ACTGTAATGGAATAGA
* *
24542 ATTTTAATGGAATAGA
1 ACTGTAATGGAATAGA
* *
24558 ACTGTAATGAAATAAA
1 ACTGTAATGGAATAGA
24574 ACTGTAAT
1 ACTGTAAT
24582 AAAAAATTCA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.45, C:0.05, G:0.20, T:0.30
Consensus pattern (16 bp):
ACTGTAATGGAATAGA
Found at i:24823 original size:61 final size:63
Alignment explanation
Indices: 24758--24890 Score: 168
Period size: 61 Copynumber: 2.2 Consensus size: 63
24748 ATATAATAGG
* *
24758 ATTATTATTTAAA-ATAATTTAATAAAAATGATAATAAATAATTTAATC-ATATT-TTAATATA
1 ATTATTATTTAAATATAATTTAATAAAAATAATAATAAATAATTTAA-CAACATTCTTAATATA
* * * *
24819 ATTATTA-TTAAATATGATTTAATAAAAGTAATAATATATAATTTAACAACATTCTTAATTTA
1 ATTATTATTTAAATATAATTTAATAAAAATAATAATAAATAATTTAACAACATTCTTAATATA
24881 ATTATT-TTTA
1 ATTATTATTTA
24891 TATTAAATTA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
60 6 0.10
61 40 0.65
62 16 0.26
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (63 bp):
ATTATTATTTAAATATAATTTAATAAAAATAATAATAAATAATTTAACAACATTCTTAATATA
Found at i:25442 original size:30 final size:30
Alignment explanation
Indices: 25408--25477 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
25398 TGAGTATCAA
** *
25408 ATAATTAAATCATAAGTCATCTTAATCTAC
1 ATAATTAAATCATAAGTCATCACAATCCAC
*
25438 ATAATCAAATCATAAGTCATCACAATCCAC
1 ATAATTAAATCATAAGTCATCACAATCCAC
25468 ATAATTAAAT
1 ATAATTAAAT
25478 GACTTACATA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (30 bp):
ATAATTAAATCATAAGTCATCACAATCCAC
Found at i:28207 original size:98 final size:98
Alignment explanation
Indices: 28038--28233 Score: 356
Period size: 98 Copynumber: 2.0 Consensus size: 98
28028 AGCCTGGATG
* *
28038 TTATATTTTTATGAACTATTCTTAATTATACTTCCTCTGCAATACTCAAATATTTTTGCTCGTTA
1 TTATATTTATATGAACTATTCTTAATTATACTTCCTCTGCAATACTCAAATATTATTGCTCGTTA
28103 TTTACTGCCTAGTAAACTTTTTGACTCAAGGTA
66 TTTACTGCCTAGTAAACTTTTTGACTCAAGGTA
*
28136 TTATATTTATATGAACTATTCTTAATTATACTTCCTCTGCAATATTCAAATATTATTGCTCGTTA
1 TTATATTTATATGAACTATTCTTAATTATACTTCCTCTGCAATACTCAAATATTATTGCTCGTTA
*
28201 TTTACTGCCTAGTAAACTTTTTGACTCGAGGTA
66 TTTACTGCCTAGTAAACTTTTTGACTCAAGGTA
28234 CGGCTTGTAG
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.28, C:0.17, G:0.10, T:0.45
Consensus pattern (98 bp):
TTATATTTATATGAACTATTCTTAATTATACTTCCTCTGCAATACTCAAATATTATTGCTCGTTA
TTTACTGCCTAGTAAACTTTTTGACTCAAGGTA
Found at i:29486 original size:97 final size:97
Alignment explanation
Indices: 29320--29516 Score: 385
Period size: 97 Copynumber: 2.0 Consensus size: 97
29310 GGAAGACAAT
29320 CATGTGTACATGACCGGCCCAGCCGAAGTAGTGTTTTACGGATCGGTTGCAGTGTGATGATTCTA
1 CATGTGTACATGACCGGCCCAGCCGAAGTAGTGTTTTACGGATCGGTTGCAGTGTGATGATTCTA
29385 ATACTGCTAAGCCGATTTTCATGTAGCGCAAA
66 ATACTGCTAAGCCGATTTTCATGTAGCGCAAA
*
29417 CATGTGTTCATGACCGGCCCAGCCGAAGTAGTGTTTTACGGATCGGTTGCAGTGTGATGATTCTA
1 CATGTGTACATGACCGGCCCAGCCGAAGTAGTGTTTTACGGATCGGTTGCAGTGTGATGATTCTA
29482 ATACTGCTAAGCCGATTTTCATGTAGCGCAAA
66 ATACTGCTAAGCCGATTTTCATGTAGCGCAAA
29514 CAT
1 CAT
29517 TGTCTATTTG
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 99 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (97 bp):
CATGTGTACATGACCGGCCCAGCCGAAGTAGTGTTTTACGGATCGGTTGCAGTGTGATGATTCTA
ATACTGCTAAGCCGATTTTCATGTAGCGCAAA
Found at i:30236 original size:88 final size:87
Alignment explanation
Indices: 30122--30290 Score: 266
Period size: 88 Copynumber: 1.9 Consensus size: 87
30112 TATAACGATG
* * *
30122 ATTTGAACTTAAATTATTAAGTTACCATTCTAATCAAAATAAATATAGGTAGTTGATCCTAAAAA
1 ATTTGAACTTAAATTATTAAGCTACCACTCTAACCAAAATAAATATAGGTAGTTGATCCTAAAAA
30187 GAAAAAATTAATCAAGTCAATA
66 GAAAAAATTAATCAAGTCAATA
* * *
30209 ATTTGAAACTTAAATTATTAAGCTACCACTCTAACCAAAATAAATATAGGTCGTTTATCTTAAAA
1 ATTTG-AACTTAAATTATTAAGCTACCACTCTAACCAAAATAAATATAGGTAGTTGATCCTAAAA
*
30274 AGAAGAAATTAATCAAG
65 AGAAAAAATTAATCAAG
30291 CCAACCATAG
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
87 5 0.07
88 69 0.93
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.31
Consensus pattern (87 bp):
ATTTGAACTTAAATTATTAAGCTACCACTCTAACCAAAATAAATATAGGTAGTTGATCCTAAAAA
GAAAAAATTAATCAAGTCAATA
Found at i:33340 original size:7 final size:7
Alignment explanation
Indices: 33330--33404 Score: 71
Period size: 7 Copynumber: 10.7 Consensus size: 7
33320 TAGAGTTTAG
33330 GATTTGA
1 GATTTGA
*
33337 GATTTGG
1 GATTTGA
* *
33344 GGTTTAA
1 GATTTGA
*
33351 GATTTAA
1 GATTTGA
33358 GATTTGA
1 GATTTGA
33365 GATTTGA
1 GATTTGA
*
33372 GGTTTGA
1 GATTTGA
* *
33379 GGTTTAA
1 GATTTGA
33386 GATTT-A
1 GATTTGA
33392 GGATTTGA
1 -GATTTGA
33400 GATTT
1 GATTT
33405 TGGATTTAGG
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
6 1 0.02
7 55 0.96
8 1 0.02
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.44
Consensus pattern (7 bp):
GATTTGA
Found at i:33361 original size:28 final size:28
Alignment explanation
Indices: 33325--33400 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 28
33315 AAACTTAGAG
* *
33325 TTTAGGATTTGAGATTTGGGGTTTAAGA
1 TTTAAGATTTGAGATTTGAGGTTTAAGA
* *
33353 TTTAAGATTTGAGATTTGAGGTTTGAGG
1 TTTAAGATTTGAGATTTGAGGTTTAAGA
33381 TTTAAGATTT-AGGATTTGAG
1 TTTAAGATTTGA-GATTTGAG
33401 ATTTTGGATT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.43
Consensus pattern (28 bp):
TTTAAGATTTGAGATTTGAGGTTTAAGA
Found at i:33383 original size:35 final size:35
Alignment explanation
Indices: 33330--33404 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
33320 TAGAGTTTAG
*
33330 GATTTGAGATTTGGGGTTTAAGATTTAAGATTTGA
1 GATTTGAGATTTGAGGTTTAAGATTTAAGATTTGA
* *
33365 GATTTGAGGTTTGAGGTTTAAGATTTAGGATTTGA
1 GATTTGAGATTTGAGGTTTAAGATTTAAGATTTGA
33400 GATTT
1 GATTT
33405 TGGATTTAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.44
Consensus pattern (35 bp):
GATTTGAGATTTGAGGTTTAAGATTTAAGATTTGA
Found at i:33410 original size:21 final size:21
Alignment explanation
Indices: 33325--33414 Score: 85
Period size: 21 Copynumber: 4.3 Consensus size: 21
33315 AAACTTAGAG
* *
33325 TTTAGGATTTGAGATTTGGGG
1 TTTAGGATTTGAGATTTTGGA
* *
33346 TTTAAGATTTAAGA-TTTGAGA
1 TTTAGGATTTGAGATTTTG-GA
* **
33367 TTTGAGG-TTTGAGGTTTAAGA
1 TTT-AGGATTTGAGATTTTGGA
33388 TTTAGGATTTGAGATTTTGGA
1 TTTAGGATTTGAGATTTTGGA
33409 TTTAGG
1 TTTAGG
33415 GTATAAGGTT
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
20 6 0.11
21 43 0.81
22 4 0.08
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.44
Consensus pattern (21 bp):
TTTAGGATTTGAGATTTTGGA
Found at i:39756 original size:16 final size:17
Alignment explanation
Indices: 39737--39768 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
39727 TTTAACAGTA
39737 AAAAAAATAA-AATTTT
1 AAAAAAATAATAATTTT
39753 AAAAAAATAATAATTT
1 AAAAAAATAATAATTT
39769 ATTTTTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AAAAAAATAATAATTTT
Found at i:48076 original size:12 final size:12
Alignment explanation
Indices: 48060--48135 Score: 75
Period size: 12 Copynumber: 6.4 Consensus size: 12
48050 AAAGCAGTAG
48060 CAAAAATAACAGA
1 CAAAAATAACA-A
*
48073 AAAAAATAACAA
1 CAAAAATAACAA
48085 CAAAAATAACAA
1 CAAAAATAACAA
* *
48097 TAAAAATAGC-A
1 CAAAAATAACAA
* *
48108 CTAAAATAATAA
1 CAAAAATAACAA
*
48120 -AAAAATAACAT
1 CAAAAATAACAA
48131 CAAAA
1 CAAAA
48136 CAATAACCAA
Statistics
Matches: 50, Mismatches: 11, Indels: 5
0.76 0.17 0.08
Matches are distributed among these distances:
11 15 0.30
12 25 0.50
13 10 0.20
ACGTcount: A:0.72, C:0.12, G:0.03, T:0.13
Consensus pattern (12 bp):
CAAAAATAACAA
Found at i:48113 original size:23 final size:23
Alignment explanation
Indices: 48060--48135 Score: 82
Period size: 23 Copynumber: 3.2 Consensus size: 23
48050 AAAGCAGTAG
48060 CAAAAATAACAGAAAAAAATAACAA
1 CAAAAATAAC--AAAAAAATAACAA
*
48085 CAAAAATAACAATAAAAATAGC-A
1 CAAAAATAACAA-AAAAATAACAA
* * *
48108 CTAAAATAATAAAAAAATAACAT
1 CAAAAATAACAAAAAAATAACAA
48131 CAAAA
1 CAAAA
48136 CAATAACCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
22 8 0.19
23 17 0.40
24 8 0.19
25 10 0.23
ACGTcount: A:0.72, C:0.12, G:0.03, T:0.13
Consensus pattern (23 bp):
CAAAAATAACAAAAAAATAACAA
Done.