Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009574.1 Kokia drynarioides strain JFW-HI SEQ_124288, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2518
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38


Found at i:1279 original size:20 final size:20

Alignment explanation


    Indices: 1254--1293  Score: 62
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1244 TTATTGTTTG

                      *   *     
       1254 TTTTTATTTTGTTCTTTTAT
          1 TTTTTATTTTCTTCCTTTAT

                                
       1274 TTTTTATTTTCTTCCTTTAT
          1 TTTTTATTTTCTTCCTTTAT

       1294 CTATTTTTTT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.10, C:0.10, G:0.03, T:0.78


Consensus pattern (20 bp):   
TTTTTATTTTCTTCCTTTAT
Done.