genome.fa.s9575.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009575.1 Kokia drynarioides strain JFW-HI SEQ_124289, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  339441

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6--48	19	2.2	20	83	4	52	34	0	4	60	1.17
3834--3897	32	2.0	32	93	0	110	40	18	14	26	1.89
9259--9312	21	2.5	23	77	19	62	24	1	1	72	1.05
9257--9312	27	2.1	27	83	6	69	23	1	1	73	1.03
13475--13503	15	2.0	15	93	6	51	34	17	0	48	1.47
16798--16844	18	2.6	18	100	0	94	0	40	12	46	1.42
24833--25318	100	4.9	99	80	6	450	36	18	18	26	1.94
25052--25316	50	5.3	50	71	5	176	35	17	21	24	1.95
24783--25383	100	6.0	99	77	6	448	36	17	18	27	1.93
25803--25844	12	3.4	12	83	9	50	50	40	0	9	1.35
27128--27193	15	4.5	14	72	27	57	25	1	1	71	1.04
33857--33926	18	3.9	18	83	7	97	10	27	10	52	1.66
35516--35563	19	2.5	20	75	21	50	54	0	0	45	0.99
42730--42772	18	2.4	18	88	0	59	16	27	30	25	1.97
43626--43662	18	2.1	18	90	10	58	21	0	2	75	0.92
43630--43671	19	2.3	18	87	4	57	23	0	7	69	1.13
52565--52617	26	2.0	26	85	7	72	45	1	22	30	1.63
52567--52617	13	3.9	13	82	5	59	45	1	23	29	1.64
52580--52642	26	2.4	26	81	0	63	41	3	23	31	1.70
54737--55779	514	2.0	515	89	1	1621	38	12	15	34	1.84
57099--57126	7	4.0	7	100	0	56	0	14	0	85	0.59
58487--58516	16	1.9	15	93	6	51	46	0	20	33	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60450--60639	91	2.0	95	84	7	246	42	17	6	33	1.75
60659--60702	18	2.4	19	84	3	54	61	2	2	34	1.21
60738--60803	19	3.4	19	76	4	69	60	3	6	30	1.36
60761--60868	29	3.9	28	73	11	89	62	4	3	29	1.33
60770--60877	19	5.8	19	68	19	59	62	4	2	30	1.30
60762--60886	9	13.6	9	67	17	51	61	4	4	30	1.32
70166--70205	15	2.6	16	84	8	55	32	0	2	65	1.06
73587--73768	52	3.5	52	87	3	253	26	14	22	36	1.93
74524--74573	21	2.4	22	80	10	59	30	10	26	34	1.89
78056--78208	23	6.6	23	74	10	89	45	19	22	12	1.84
78119--78159	21	2.0	21	85	0	55	48	17	19	14	1.81
84481--84553	24	3.2	24	80	11	107	28	9	20	41	1.84
84495--84565	21	3.2	21	79	11	88	28	7	19	45	1.76
84971--85449	239	2.0	240	89	2	739	43	15	5	36	1.70
86491--87142	149	4.4	147	81	7	693	42	9	3	43	1.56
88033--88743	42	16.9	42	86	0	947	36	22	19	22	1.95
89144--89169	12	2.2	12	100	0	52	7	7	0	84	0.77
89144--89182	11	3.5	11	85	3	51	7	7	5	79	1.05
100480--100529	25	2.0	25	100	0	100	44	12	12	32	1.78
101993--102493	150	3.4	150	87	6	709	43	10	2	43	1.54
103029--103098	29	2.5	28	90	6	106	47	2	0	50	1.16
103051--103107	20	3.0	20	73	14	57	47	3	0	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110001--110056	25	2.2	25	83	0	67	19	21	26	32	1.97
110178--110215	20	1.9	20	84	10	51	36	18	5	39	1.73
114027--114056	11	2.7	11	89	0	51	33	6	23	36	1.81
117256--117309	21	2.7	19	78	16	56	42	0	5	51	1.25
122675--122714	16	2.5	17	92	8	66	35	7	27	30	1.84
122826--122977	58	2.6	57	86	3	214	52	1	1	44	1.17
122881--122967	26	3.2	26	69	15	66	50	2	0	47	1.13
122831--122968	57	2.4	58	88	1	215	52	1	0	44	1.14
122831--123000	58	3.0	55	78	12	173	53	1	1	43	1.18
125687--125713	3	9.0	3	100	0	54	33	0	0	66	0.92
136143--136176	16	2.1	16	89	10	52	82	0	5	11	0.83
136142--136181	21	1.9	21	84	0	53	80	0	7	12	0.91
139098--139155	29	2.0	29	89	0	89	6	20	6	65	1.40
159674--159728	27	2.0	27	89	0	83	30	21	23	23	1.99
161144--161353	44	4.8	44	93	0	330	32	20	9	37	1.84
167657--167716	26	2.3	26	85	0	84	66	8	3	21	1.33
167946--168047	50	2.0	50	92	0	168	49	6	12	31	1.67
183073--183141	27	2.5	27	81	11	86	21	0	24	53	1.46
184636--184684	24	2.0	24	92	0	80	24	22	26	26	2.00
187825--187882	28	2.1	28	96	0	107	25	18	15	39	1.91
193923--194086	82	2.0	82	90	2	258	30	17	20	32	1.95
212425--212535	37	3.0	36	81	5	132	32	27	21	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218821--218868	25	1.9	25	83	8	62	12	39	2	45	1.54
224493--224545	21	2.5	21	81	0	70	33	26	16	22	1.96
227438--227467	13	2.3	13	94	0	51	16	0	0	83	0.65
233365--233430	34	1.9	35	96	3	125	42	25	4	27	1.74
241296--241370	24	3.1	24	92	0	123	54	6	13	25	1.63
243310--243384	24	3.1	24	90	0	114	56	8	10	25	1.61
243766--243857	28	3.3	28	78	6	105	31	16	17	34	1.92
259761--259820	3	20.0	3	77	13	61	68	1	30	0	0.99
259761--259819	18	3.3	17	88	7	82	67	1	30	0	1.00
262718--262907	52	3.6	51	84	8	240	28	13	22	34	1.93
262718--262951	52	4.5	52	82	8	237	28	12	23	35	1.92
267159--267217	30	2.0	30	86	6	84	38	0	5	55	1.22
268006--268035	16	1.9	16	93	6	53	16	13	0	70	1.18
268001--268061	22	2.8	22	85	7	81	14	13	1	70	1.24
268005--268061	21	2.6	22	83	8	73	14	12	1	71	1.21
269368--269428	21	2.9	21	95	0	104	40	11	18	29	1.85
273033--273164	23	5.7	23	84	1	176	48	12	5	33	1.64
273035--273165	46	2.8	46	90	2	201	48	12	5	34	1.63
273033--273164	69	1.9	69	87	3	194	48	12	5	33	1.64
274616--274666	25	2.0	25	96	0	93	41	15	17	25	1.89
279187--279631	193	2.3	194	82	5	528	30	19	24	25	1.98
283796--283835	21	1.9	21	85	10	55	10	10	27	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318875--319004	14	9.4	14	72	7	63	25	18	20	36	1.95
318884--318956	21	3.5	20	75	5	65	23	20	19	36	1.95
318924--318990	7	9.6	7	79	12	57	22	16	25	35	1.94
320210--320252	6	6.7	6	84	10	50	34	0	2	62	1.08
327950--328026	36	2.1	36	90	0	118	38	25	7	27	1.83
328098--328382	23	12.4	23	86	0	401	47	13	3	35	1.61
333472--333517	21	2.2	21	96	0	83	21	28	17	32	1.96

Tables:   1

The End!