genome.fa.s9578.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009578.1 Kokia drynarioides strain JFW-HI SEQ_124292, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  229893

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389--439	18	2.6	19	87	9	68	60	0	0	39	0.97
1369--1637	29	9.1	29	79	12	273	33	27	4	35	1.76
1369--1637	30	9.1	29	77	15	250	33	27	4	35	1.76
1368--1637	59	4.6	59	89	0	396	33	27	4	35	1.76
1368--1668	118	2.5	118	85	3	401	32	26	4	35	1.77
1699--1757	28	2.1	28	84	6	75	28	28	10	32	1.90
12539--13130	205	2.9	206	88	1	848	35	20	21	21	1.96
13525--13636	17	6.4	18	79	4	104	44	1	2	50	1.26
13525--13617	35	2.7	34	85	9	109	40	2	3	53	1.29
13557--13617	6	10.5	6	76	13	65	44	1	1	52	1.20
13560--13615	11	4.9	11	82	10	60	39	1	1	57	1.20
13526--13634	52	2.1	52	82	0	128	44	1	2	50	1.26
14017--14082	33	2.0	33	100	0	132	45	24	9	21	1.80
14353--14396	21	2.1	21	83	8	54	56	2	0	40	1.11
15395--15556	29	5.5	29	76	12	152	32	28	4	34	1.77
15395--15532	30	4.7	29	78	14	140	33	28	4	33	1.77
15395--15569	59	3.0	59	87	5	246	33	29	4	33	1.78
15600--15663	28	2.2	28	88	2	92	32	28	9	29	1.88
18087--18120	15	2.2	16	89	5	52	61	0	2	35	1.11
18621--18708	31	2.8	31	72	13	74	44	7	13	34	1.73
19809--19849	3	13.7	3	94	0	73	63	2	0	34	1.08
22654--22738	44	1.9	44	85	4	118	29	5	25	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25377--25482	57	1.9	57	88	3	162	43	12	15	29	1.82
25376--25506	57	2.3	55	79	3	154	46	16	12	24	1.82
29528--29704	24	7.4	24	85	0	221	28	27	22	20	1.99
29528--29707	48	3.8	48	86	3	265	30	27	22	20	1.98
32615--32665	26	2.0	26	84	0	66	25	15	29	29	1.96
35440--35482	18	2.2	20	88	8	63	0	30	0	69	0.88
35435--35485	21	2.5	20	78	15	59	0	29	0	70	0.87
37481--37510	15	1.9	16	93	6	53	20	16	23	40	1.91
44611--44719	26	4.2	26	83	0	119	38	17	20	23	1.93
44611--44724	52	2.2	52	83	0	138	37	18	20	23	1.94
44713--44763	26	2.0	26	88	0	75	19	17	27	35	1.94
49109--49152	22	2.0	22	95	0	79	72	2	9	15	1.19
54101--54141	12	3.1	14	80	16	52	73	7	4	14	1.22
54132--54174	19	2.3	19	84	8	52	58	4	0	37	1.19
59047--59087	12	3.1	14	80	16	52	73	7	4	14	1.22
59078--59120	19	2.3	19	84	8	52	58	4	0	37	1.19
59320--59370	24	2.1	24	82	7	59	47	9	3	39	1.55
67379--67564	87	2.1	87	88	2	284	24	15	20	39	1.91
68691--68864	30	5.9	30	80	6	176	40	20	2	36	1.65
68702--68930	59	3.9	57	75	9	183	38	21	3	35	1.71
68821--68990	89	1.9	88	87	8	247	35	25	5	32	1.80
68793--68986	28	6.7	28	74	13	135	36	24	4	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74281--74524	26	9.4	26	82	1	283	33	16	23	26	1.96
92574--92619	15	2.9	17	75	21	55	67	0	32	0	0.91
92605--92630	6	4.3	6	100	0	52	80	0	19	0	0.71
105548--105612	22	3.2	22	63	24	61	36	21	1	40	1.63
105548--105625	38	2.1	38	100	0	156	35	23	2	38	1.68
108952--108982	9	3.4	9	100	0	62	38	0	0	61	0.96
126195--126243	24	2.0	24	100	0	98	38	8	8	44	1.64
126243--126269	14	1.9	14	100	0	54	44	7	11	37	1.68
126443--126514	38	1.9	38	85	2	101	43	1	9	45	1.45
130032--130064	13	2.5	13	95	0	57	27	30	36	6	1.81
142168--143028	439	2.0	439	91	1	1386	28	17	21	32	1.96
143980--144018	16	2.4	16	91	8	62	35	2	0	61	1.10
148033--148072	15	2.7	15	84	0	53	7	10	2	80	1.00
151897--151935	18	2.3	16	86	8	51	20	0	7	71	1.10
152909--152971	24	2.6	24	92	0	99	31	20	26	20	1.98
155126--155198	21	3.5	21	87	7	103	64	1	1	32	1.11
155129--155198	15	5.0	14	73	16	56	65	1	1	31	1.10
155124--155187	27	2.4	28	87	7	89	67	0	0	32	0.91
162427--162495	34	2.0	34	94	0	120	49	21	1	27	1.58
181942--181972	15	2.1	15	93	0	53	74	6	3	16	1.16
186888--186948	32	1.9	32	86	6	88	29	14	6	49	1.69
186900--186960	32	1.9	32	86	3	88	29	13	9	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187241--187335	29	3.2	28	74	21	95	43	10	18	27	1.83
187261--187354	31	3.0	32	72	22	101	42	8	20	28	1.81
187190--187366	60	2.9	61	83	7	218	46	10	18	24	1.81
188868--188975	54	2.0	54	100	0	216	27	3	29	38	1.74
190097--190141	22	2.0	22	100	0	90	48	13	20	17	1.80
191200--191593	29	13.8	29	76	13	316	30	1	30	37	1.68
191198--191476	88	3.2	87	84	5	384	31	1	29	36	1.66
191200--191577	58	6.6	58	84	8	447	31	1	30	36	1.67
191360--191525	49	3.2	48	75	17	161	29	1	31	37	1.65
191458--191496	20	2.0	20	94	0	69	28	0	30	41	1.57
191400--191552	78	1.9	78	82	8	186	29	0	31	38	1.62
193237--193322	17	4.8	18	78	13	72	51	6	2	39	1.42
193884--194049	86	2.0	84	81	9	194	24	24	16	34	1.96
193677--194332	205	3.2	205	86	1	868	23	22	18	35	1.96
207561--207603	16	2.9	14	86	10	52	51	4	9	34	1.55
209301--209338	20	1.9	20	94	0	67	50	23	13	13	1.76
215978--216017	21	1.9	21	89	0	62	32	20	17	30	1.95
215990--216030	21	2.0	21	85	9	57	31	21	17	29	1.96
216026--216061	18	2.0	18	88	0	54	19	13	36	30	1.91
221404--221462	31	2.0	30	90	6	93	37	10	10	42	1.73
221401--221514	31	3.8	29	78	12	92	38	11	9	40	1.74
226791--226822	16	2.0	16	93	0	55	21	6	15	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228405--228473	33	2.1	34	97	2	131	60	2	10	26	1.42
229304--229357	28	1.9	28	96	0	99	46	14	9	29	1.76

Tables:   1

The End!