Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009583.1 Kokia drynarioides strain JFW-HI SEQ_124297, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60471
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 6 characters in sequence are not A, C, G, or T
Found at i:7225 original size:49 final size:49
Alignment explanation
Indices: 7153--7252 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
7143 ATGATCATTG
7153 GAACTGTTAAATCTATTACTGCTCTAGTTGATGAGCAAAGTTTCCCTGA
1 GAACTGTTAAATCTATTACTGCTCTAGTTGATGAGCAAAGTTTCCCTGA
*
7202 GAACTGTTAACTCTATTACTGCTCTAGTTGATGAGCAAAGTTTCCCTGA
1 GAACTGTTAAATCTATTACTGCTCTAGTTGATGAGCAAAGTTTCCCTGA
7251 GA
1 GA
7253 CAAGGATTGG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (49 bp):
GAACTGTTAAATCTATTACTGCTCTAGTTGATGAGCAAAGTTTCCCTGA
Found at i:13332 original size:30 final size:31
Alignment explanation
Indices: 13298--13369 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 31
13288 CTCACATTTA
*
13298 ACAAAATAGTCACTCAACTT-T-AAAAATGTG
1 ACAAAATAGTCACTAAACTTATCAAAAA-GTG
* * *
13328 ACAAAACAGTTACTAAAGTTATCAAAAAGTG
1 ACAAAATAGTCACTAAACTTATCAAAAAGTG
13359 ACAAAATAGTC
1 ACAAAATAGTC
13370 CTCTTATTGT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
30 16 0.47
31 13 0.38
32 5 0.15
ACGTcount: A:0.50, C:0.15, G:0.11, T:0.24
Consensus pattern (31 bp):
ACAAAATAGTCACTAAACTTATCAAAAAGTG
Found at i:14464 original size:7 final size:7
Alignment explanation
Indices: 14452--14477 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14442 AATTATTGAA
14452 TTATAGC
1 TTATAGC
14459 TTATAGC
1 TTATAGC
14466 TTATAGC
1 TTATAGC
14473 TTATA
1 TTATA
14478 TGTGTTTACG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.46
Consensus pattern (7 bp):
TTATAGC
Found at i:15419 original size:23 final size:22
Alignment explanation
Indices: 15389--15515 Score: 110
Period size: 23 Copynumber: 5.5 Consensus size: 22
15379 ACACTAGCGC
*
15389 GCTCTCTGTTTAGCACGTCTCGT
1 GCTCTCTGTTTAGCACGTGT-GT
*
15412 GCTCTCTGTTACTAGCATTGTGTGT
1 GCTCTCTGTT--TAGCA-CGTGTGT
* * *
15437 GCACTCTGATTAGCATTGTGTGT
1 GCTCTCTGTTTAGCA-CGTGTGT
* * *
15460 GCTCTCTGATTAGTACTTTGTGT
1 GCTCTCTGTTTAGCAC-GTGTGT
*
15483 ACTCTCTGTTTAGCACTGTGTGT
1 GCTCTCTGTTTAGCAC-GTGTGT
15506 GCTCTCTGTT
1 GCTCTCTGTT
15516 GCCCAACACT
Statistics
Matches: 87, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
23 69 0.79
25 15 0.17
26 3 0.03
ACGTcount: A:0.12, C:0.22, G:0.23, T:0.43
Consensus pattern (22 bp):
GCTCTCTGTTTAGCACGTGTGT
Found at i:15503 original size:46 final size:48
Alignment explanation
Indices: 15390--15515 Score: 152
Period size: 46 Copynumber: 2.7 Consensus size: 48
15380 CACTAGCGCG
* *
15390 CTCTCTGTTTAGCAC-GTCTCGTGCTCTCTGTTACTAGCATTGTGTGTG
1 CTCTCTGTTTAGCACTGTGT-GTGCTCTCTGTTACTAGCATTGTGTGTA
* * * *
15438 CACTCTGATTAGCATTGTGTGTGCTCTCTGATTAGTA-C-TT-TGTGTA
1 CTCTCTGTTTAGCACTGTGTGTGCTCTCTG-TTACTAGCATTGTGTGTA
15484 CTCTCTGTTTAGCACTGTGTGTGCTCTCTGTT
1 CTCTCTGTTTAGCACTGTGTGTGCTCTCTGTT
15516 GCCCAACACT
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
45 2 0.03
46 32 0.48
47 2 0.03
48 23 0.34
49 8 0.12
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (48 bp):
CTCTCTGTTTAGCACTGTGTGTGCTCTCTGTTACTAGCATTGTGTGTA
Found at i:15547 original size:21 final size:20
Alignment explanation
Indices: 15434--15561 Score: 67
Period size: 23 Copynumber: 5.7 Consensus size: 20
15424 TAGCATTGTG
* *
15434 TGTGCACTCTGATTAGCATTGT
1 TGTGCTCTCTG-TTAGCACT-T
*
15456 GTGTGCTCTCTGATTAGTACTT
1 -TGTGCTCTCTG-TTAGCACTT
15478 TGTGTACTCTCTGTTTAGCACTGT
1 TGTG--CTCTCTG-TTAGCACT-T
*
15502 GTGTGCTCTCTGTTGCCCAACACTT
1 -TGTGCTCTCTGTT----AGCACTT
*
15527 ATGTGCTCTCTGTTAGTACTT
1 -TGTGCTCTCTGTTAGCACTT
*
15548 TGGTACTCTCTGTT
1 T-GTGCTCTCTGTT
15562 TGTTCCGTAT
Statistics
Matches: 86, Mismatches: 10, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
20 1 0.01
21 20 0.23
22 3 0.03
23 38 0.44
24 1 0.01
25 18 0.21
26 5 0.06
ACGTcount: A:0.13, C:0.22, G:0.21, T:0.44
Consensus pattern (20 bp):
TGTGCTCTCTGTTAGCACTT
Found at i:16848 original size:29 final size:30
Alignment explanation
Indices: 16783--16849 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 30
16773 TGTGACGGAA
* *
16783 AAGGATTGTTTTGTCACGTTTTCAAAGTTG
1 AAGGACTGTTTTGTCACGATTTCAAAGTTG
*
16813 AATGACTGTTTTGTCAC-ATTTCAAAGTTG
1 AAGGACTGTTTTGTCACGATTTCAAAGTTG
*
16842 AGGGACTG
1 AAGGACTG
16850 AAATGTAAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 17 0.53
30 15 0.47
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.39
Consensus pattern (30 bp):
AAGGACTGTTTTGTCACGATTTCAAAGTTG
Found at i:19255 original size:3 final size:3
Alignment explanation
Indices: 19249--19298 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
19239 AGACTAGTGT
* * *
19249 TGA TGA TGT TGA TGA TGT TGA TGA TGT TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
19297 TG
1 TG
19299 GATGGGAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.26, C:0.00, G:0.34, T:0.40
Consensus pattern (3 bp):
TGA
Found at i:19260 original size:9 final size:9
Alignment explanation
Indices: 19246--19298 Score: 88
Period size: 9 Copynumber: 5.9 Consensus size: 9
19236 ATAAGACTAG
19246 TGTTGATGA
1 TGTTGATGA
19255 TGTTGATGA
1 TGTTGATGA
19264 TGTTGATGA
1 TGTTGATGA
19273 TGTTGATGA
1 TGTTGATGA
*
19282 TGATGATGA
1 TGTTGATGA
*
19291 TGATGATG
1 TGTTGATG
19299 GATGGGAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.25, C:0.00, G:0.34, T:0.42
Consensus pattern (9 bp):
TGTTGATGA
Found at i:26384 original size:17 final size:17
Alignment explanation
Indices: 26362--26396 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
26352 ATAGGGATGC
26362 AAAAGCCAAATATTCAA
1 AAAAGCCAAATATTCAA
26379 AAAAGCCAAATATTCAA
1 AAAAGCCAAATATTCAA
26396 A
1 A
26397 TGGTAAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.60, C:0.17, G:0.06, T:0.17
Consensus pattern (17 bp):
AAAAGCCAAATATTCAA
Found at i:31202 original size:12 final size:13
Alignment explanation
Indices: 31166--31202 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
31156 GTTCACGAAC
31166 AATCTCGTTTA-T
1 AATCTCGTTTATT
*
31178 AATCTTGTTTATT
1 AATCTCGTTTATT
31191 AA-CTCGTTTATT
1 AATCTCGTTTATT
31203 TATTAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 19 0.86
13 3 0.14
ACGTcount: A:0.24, C:0.14, G:0.08, T:0.54
Consensus pattern (13 bp):
AATCTCGTTTATT
Found at i:31311 original size:24 final size:22
Alignment explanation
Indices: 31284--31342 Score: 73
Period size: 24 Copynumber: 2.6 Consensus size: 22
31274 TCATTAACAT
*
31284 TGTTTGTGAACATGTTCAATTATA
1 TGTTCGTGAACATGTTC-ATT-TA
* *
31308 TGTTCATGAACATGTTCGTTTA
1 TGTTCGTGAACATGTTCATTTA
31330 TGTTCGTGAACAT
1 TGTTCGTGAACAT
31343 TAAACAAACG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 14 0.45
23 2 0.06
24 15 0.48
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (22 bp):
TGTTCGTGAACATGTTCATTTA
Found at i:31334 original size:22 final size:24
Alignment explanation
Indices: 31290--31342 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 24
31280 ACATTGTTTG
31290 TGAACATGTTCAATTATATGTTCA
1 TGAACATGTTCAATTATATGTTCA
* *
31314 TGAACATGTTC-GTT-TATGTTCG
1 TGAACATGTTCAATTATATGTTCA
31336 TGAACAT
1 TGAACAT
31343 TAAACAAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 14 0.52
23 2 0.07
24 11 0.41
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.42
Consensus pattern (24 bp):
TGAACATGTTCAATTATATGTTCA
Found at i:53048 original size:242 final size:242
Alignment explanation
Indices: 52621--53099 Score: 859
Period size: 242 Copynumber: 2.0 Consensus size: 242
52611 TAGCTGATGT
52621 TACTCAAACATAATATATAAATAGTCATACTATATATTTCCTTTCCCTTTCCCCCTTATGGGTGT
1 TACTCAAACATAATATATAAATAGTCATACTATATATTTCCTTTCCCTTTCCCCCTTATGGGTGT
*
52686 TTTACTGGTTTTTGAGGGGTTTGGTGATATATGCTTCCATAAGCTTGTTTGGTGCATATGTATTA
66 TTTACTGGTTTTTGAGGGGTTTGGTGATATATGCTTCCATAAGCTTGTCTGGTGCATATGTATTA
*
52751 CTGATGTAGAATAATAATGACAAGATTTTGTGATTTGAGATATGGAAACTTACCTGCCAGTGCTA
131 CTGATGTAGAATAATAATGACAAGATTCTGTGATTTGAGATATGGAAACTTACCTGCCAGTGCTA
52816 CTTCACATAATTTTCATCCTCTTTTTTCTGCCCAATGGATGGGTATG
196 CTTCACATAATTTTCATCCTCTTTTTTCTGCCCAATGGATGGGTATG
* *
52863 TACTCAAACATAATATATAAATAGTCATACTTTATATTTCCTTTCGCTTTCCCCCTTATGGGTGT
1 TACTCAAACATAATATATAAATAGTCATACTATATATTTCCTTTCCCTTTCCCCCTTATGGGTGT
* *
52928 TTTACTGGTTTTTGAGGGGTTTGGTGGTATATGCTTCCATAAGCTTGTCTGGTGCATATTTATTA
66 TTTACTGGTTTTTGAGGGGTTTGGTGATATATGCTTCCATAAGCTTGTCTGGTGCATATGTATTA
* * *
52993 CTGATGTAGAATAATAATGATAAGATTCTGTGATTTGAGATATGGAAATTTACCTGCCTGTGCTA
131 CTGATGTAGAATAATAATGACAAGATTCTGTGATTTGAGATATGGAAACTTACCTGCCAGTGCTA
* *
53058 CTTCACATAATTTTCTTCCTCTTTTTTCTGGCCAATGGATGG
196 CTTCACATAATTTTCATCCTCTTTTTTCTGCCCAATGGATGG
53100 TAAGCCTTGA
Statistics
Matches: 226, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
242 226 1.00
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (242 bp):
TACTCAAACATAATATATAAATAGTCATACTATATATTTCCTTTCCCTTTCCCCCTTATGGGTGT
TTTACTGGTTTTTGAGGGGTTTGGTGATATATGCTTCCATAAGCTTGTCTGGTGCATATGTATTA
CTGATGTAGAATAATAATGACAAGATTCTGTGATTTGAGATATGGAAACTTACCTGCCAGTGCTA
CTTCACATAATTTTCATCCTCTTTTTTCTGCCCAATGGATGGGTATG
Found at i:53116 original size:10 final size:10
Alignment explanation
Indices: 53101--53128 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
53091 AATGGATGGT
53101 AAGCCTTGAA
1 AAGCCTTGAA
53111 AAGCCTTGAA
1 AAGCCTTGAA
53121 AAGCCTTG
1 AAGCCTTG
53129 TTTTATTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (10 bp):
AAGCCTTGAA
Found at i:53494 original size:251 final size:255
Alignment explanation
Indices: 52985--53500 Score: 941
Period size: 251 Copynumber: 2.0 Consensus size: 255
52975 TCTGGTGCAT
52985 ATTTATTACTGATGTAGAATAATAATGATAAGATTCTGTGATTTGAGATATGGAAATTTACCTGC
1 ATTTATTACTGATGTAGAATAATAATGATAAGATTCTGTGATTTGAGATATGGAAATTTACCTGC
53050 CTGTGCTACTTCACATAATTTTCTTCCTCTTTTTTCTGGCCAATGGATGGTAAGCCTTGAAAAGC
66 CTGTGCTACTTCACATAATTTTCTTCCTCTTTTTTCTGGCCAATGGATGG--AG-C-T--AAAGC
53115 CTTGAAAAGCCTTGTTTTATTAACATTTCAGGCCAATTAAACCAAAGAATCAGACTCTACAAGAG
125 CTTGAAAAGCCTTGTTTTATTAACATTTCAGGCCAATTAAACCAAAGAATCAGACTCTACAAGAG
53180 TTACTTATAGAATCTTACGCAAGCTTTTACATCAATCAATAAAATGGAGAGAGATAGAATTCACA
190 TTACTTATAGAATCTTACGCAAGCTTTTACATCAATCAATAAAATGGAGAGAGATAGAATTCACA
53245 C
255 C
*
53246 ATTTATTACTGATGTAGAATAATAATGATAAGATTTTGTGATTTGAGATATGGAAATTTACCTGC
1 ATTTATTACTGATGTAGAATAATAATGATAAGATTCTGTGATTTGAGATATGGAAATTTACCTGC
53311 CTGTGCTACTTCACATAATTTTCTTCCTCTTTTTTCTGGCCAATGGAT-G-G-T-AAGCCTTGAA
66 CTGTGCTACTTCACATAATTTTCTTCCTCTTTTTTCTGGCCAATGGATGGAGCTAAAGCCTTGAA
53372 AAGCCTTGTTTTATTAACATTTCAGGCCAATTAAACCAAAGAATCAGACTCTACAAGAGTTACTT
131 AAGCCTTGTTTTATTAACATTTCAGGCCAATTAAACCAAAGAATCAGACTCTACAAGAGTTACTT
53437 ATAGAATCTTACGCAAGCTTTTACATCAATCAATAAAATGGAGAGAGATAGAATTCACAC
196 ATAGAATCTTACGCAAGCTTTTACATCAATCAATAAAATGGAGAGAGATAGAATTCACAC
53497 ATTT
1 ATTT
53501 CACAACCATG
Statistics
Matches: 254, Mismatches: 1, Indels: 10
0.96 0.00 0.04
Matches are distributed among these distances:
251 139 0.55
254 1 0.00
257 1 0.00
260 1 0.00
261 112 0.44
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (255 bp):
ATTTATTACTGATGTAGAATAATAATGATAAGATTCTGTGATTTGAGATATGGAAATTTACCTGC
CTGTGCTACTTCACATAATTTTCTTCCTCTTTTTTCTGGCCAATGGATGGAGCTAAAGCCTTGAA
AAGCCTTGTTTTATTAACATTTCAGGCCAATTAAACCAAAGAATCAGACTCTACAAGAGTTACTT
ATAGAATCTTACGCAAGCTTTTACATCAATCAATAAAATGGAGAGAGATAGAATTCACAC
Found at i:53810 original size:81 final size:81
Alignment explanation
Indices: 53674--53828 Score: 258
Period size: 81 Copynumber: 1.9 Consensus size: 81
53664 ACTGATTGGT
* * *
53674 CCATCACTTTTTTGCAAACCTTTTCTGCTCTTCAATGGTGACACCAATCTGTTAGCCAAAT-GGG
1 CCATCACTTCTTTGCAAACCTTTTCTGCTCTTCAATGGTGAAACCAATCTATTAGCC-AATCGGG
53738 AAGGTGAAAATGATTTG
65 AAGGTGAAAATGATTTG
*
53755 CCATCACTTCTTTGCAAACTTTTTCTGCTCTTCAATGGTGAAACCAATCTATTAGCCAATCGGGA
1 CCATCACTTCTTTGCAAACCTTTTCTGCTCTTCAATGGTGAAACCAATCTATTAGCCAATCGGGA
53820 AGGTGAAAA
66 AGGTGAAAA
53829 CGATCTCCGT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
80 3 0.04
81 66 0.96
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.32
Consensus pattern (81 bp):
CCATCACTTCTTTGCAAACCTTTTCTGCTCTTCAATGGTGAAACCAATCTATTAGCCAATCGGGA
AGGTGAAAATGATTTG
Found at i:55864 original size:20 final size:20
Alignment explanation
Indices: 55832--55969 Score: 99
Period size: 20 Copynumber: 7.2 Consensus size: 20
55822 TTTAATGTTA
55832 TAAGAAA-TTAGTAATTTTG
1 TAAGAAATTTAGTAATTTTG
* *
55851 TAAGAAATTTAGTAA-GTTA
1 TAAGAAATTTAGTAATTTTG
* * *
55870 TAAGATATTTAATAATTTTA
1 TAAGAAATTTAGTAATTTTG
*
55890 TAA-AAATTT-G-AAGATTT-
1 TAAGAAATTTAGTAA-TTTTG
* * *
55907 TAATACATTCAGTAATTTTG
1 TAAGAAATTTAGTAATTTTG
* * *
55927 TAAGAAATTCAATAAATTTG
1 TAAGAAATTTAGTAATTTTG
* *
55947 TAAAAAATTTAGTAATTCTG
1 TAAGAAATTTAGTAATTTTG
55967 TAA
1 TAA
55970 AAAAAAAAAA
Statistics
Matches: 92, Mismatches: 20, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
17 5 0.05
18 7 0.08
19 31 0.34
20 49 0.53
ACGTcount: A:0.45, C:0.03, G:0.11, T:0.41
Consensus pattern (20 bp):
TAAGAAATTTAGTAATTTTG
Found at i:55872 original size:38 final size:36
Alignment explanation
Indices: 55828--55935 Score: 110
Period size: 38 Copynumber: 2.9 Consensus size: 36
55818 AAACTTTAAT
55828 GTTATAAGAAATTAGTAATTTTGTAAGAAATTTAGTAA
1 GTTATAAGAAATTAGTAATTTTGTAAGAAATTT-G-AA
* * *
55866 GTTATAAGATATTTAATAATTTTATAA-AAATTTGAA
1 GTTATAAGA-AATTAGTAATTTTGTAAGAAATTTGAA
* * *
55902 GATTTTAATACATTCAGTAATTTTGTAAGAAATT
1 G-TTATAAGAAATT-AGTAATTTTGTAAGAAATT
55936 CAATAAATTT
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
36 5 0.09
37 18 0.32
38 20 0.35
39 14 0.25
ACGTcount: A:0.44, C:0.02, G:0.12, T:0.43
Consensus pattern (36 bp):
GTTATAAGAAATTAGTAATTTTGTAAGAAATTTGAA
Found at i:55880 original size:75 final size:76
Alignment explanation
Indices: 55792--55935 Score: 172
Period size: 75 Copynumber: 1.9 Consensus size: 76
55782 AATAATTTAC
* *
55792 TTATAAGGAATTTAGTGA-TTTATTAAAAACTTT-AATG-TTATAAGAAATT-AGTAATTTTGTA
1 TTATAAGGAATTTAATAATTTTA-TAAAAA-TTTGAA-GATTATAAGAAATTCAGTAATTTTGTA
55853 AGAAATTTAGTAAG
63 AGAAATTTAGTAAG
* * *
55867 TTATAA-GATATTTAATAATTTTATAAAAATTTGAAGATTTTAATACATTCAGTAATTTTGTAAG
1 TTATAAGGA-ATTTAATAATTTTATAAAAATTTGAAGATTATAAGAAATTCAGTAATTTTGTAAG
55931 AAATT
65 AAATT
55936 CAATAAATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
74 6 0.10
75 30 0.51
76 23 0.39
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (76 bp):
TTATAAGGAATTTAATAATTTTATAAAAATTTGAAGATTATAAGAAATTCAGTAATTTTGTAAGA
AATTTAGTAAG
Done.