genome.fa.s9586.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009586.1 Kokia drynarioides strain JFW-HI SEQ_124300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123302

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13737--13774	18	2.1	19	90	5	60	44	2	0	52	1.14
13737--13777	19	2.1	20	86	13	59	43	2	0	53	1.13
14076--14126	26	2.0	26	84	7	68	64	15	7	11	1.48
14579--14604	3	8.7	3	100	0	52	65	0	34	0	0.93
14849--14888	15	2.7	14	81	11	53	45	2	0	52	1.14
19713--19833	36	3.4	36	79	6	120	35	24	12	27	1.91
35227--35266	18	2.2	18	86	8	55	47	0	0	52	1.00
39767--39906	16	7.8	16	67	21	73	15	22	30	31	1.95
39783--39920	21	7.3	20	65	22	84	13	21	31	32	1.93
39764--39943	37	4.9	37	95	0	317	15	22	30	32	1.94
41367--41556	53	3.6	53	86	0	281	27	16	21	34	1.95
54238--54478	53	4.5	53	88	0	311	28	16	20	34	1.95
55170--55224	21	2.6	21	85	0	74	27	16	21	34	1.95
59492--59557	20	3.4	19	75	10	53	40	12	7	39	1.71
62228--62266	11	3.5	11	83	16	53	74	2	7	15	1.15
64029--64071	22	1.9	23	85	4	61	13	18	2	65	1.38
67566--67610	12	3.8	13	77	19	53	71	6	8	13	1.31
73272--73670	23	17.3	23	86	3	525	33	6	13	45	1.70
74355--74405	21	2.5	21	87	3	68	39	17	17	25	1.92
81322--81457	25	5.4	25	81	3	139	14	16	22	46	1.83
81318--81478	50	3.2	50	78	4	182	14	15	22	47	1.82
81335--81479	25	5.8	25	80	3	130	15	15	23	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90787--90826	15	2.6	17	77	22	52	37	10	0	52	1.35
91416--91445	15	2.0	15	93	0	51	30	0	0	70	0.88
92378--92426	25	1.9	26	84	12	66	24	2	8	65	1.31
92552--92604	24	2.2	25	80	10	65	22	5	5	66	1.35
92373--92563	106	1.8	101	83	10	244	20	4	6	67	1.33
92514--92627	15	8.5	14	69	23	61	19	4	5	71	1.23
101598--102555	49	19.5	49	78	2	787	40	18	24	16	1.91
103435--103483	25	1.9	26	84	12	66	22	4	10	63	1.43
103598--103672	25	2.8	27	74	15	75	21	6	6	65	1.40
103622--103673	25	2.1	25	89	7	79	23	3	3	69	1.22
103963--104018	23	2.4	24	82	11	71	26	5	7	60	1.44
108700--108757	3	19.3	3	100	0	116	0	32	0	67	0.91
110856--110896	15	2.7	15	80	0	55	46	17	12	24	1.82
112054--112353	38	8.0	38	74	3	189	19	21	26	33	1.96
112052--112358	112	2.7	113	78	5	307	18	20	27	33	1.96
111954--112351	150	2.7	150	75	7	353	18	20	26	34	1.96
111954--112309	75	4.8	75	75	5	281	17	21	27	33	1.96
114071--114098	13	2.2	13	100	0	56	32	28	0	39	1.57
115811--115887	20	4.4	18	70	29	69	51	0	0	48	1.00
115823--115876	13	3.9	13	75	13	54	51	0	0	48	1.00
115820--115892	29	2.5	29	97	0	137	54	0	0	45	0.99
119067--119123	22	2.6	22	88	0	78	14	15	22	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119132--119210	25	3.2	24	76	15	79	13	25	12	48	1.78
119132--119210	26	3.2	25	75	12	72	13	25	12	48	1.78
120033--120438	75	5.4	75	82	0	330	16	22	26	33	1.95
120046--120332	113	2.5	113	85	1	362	16	22	28	32	1.96
120043--120438	38	10.6	38	73	4	160	17	22	26	33	1.96
121675--121705	10	3.1	10	100	0	62	41	19	0	38	1.51

Tables:   1

The End!