Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009589.1 Kokia drynarioides strain JFW-HI SEQ_124304, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2138
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29


Found at i:666 original size:45 final size:45

Alignment explanation


    Indices: 602--738  Score: 193
    Period size: 45  Copynumber: 3.0  Consensus size: 45

        592 GCATAGCTCA

                     *               *                   
        602 TCAAGCCAATGATATCAGCCTCAGTCTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                                   *                     
        647 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                 **           *  *              *   *    
        692 TCAAGGGAAGGATATCAGGCTGAGTTTGACGAGCCATCGCGATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

              
        737 TC
          1 TC

        739 TATTCCTCCC


Statistics
Matches: 82,  Mismatches: 10, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  45   82  1.00

ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

Found at i:759 original size:21 final size:21

Alignment explanation


    Indices: 733--775  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        723 AGCCATCGCG

                    *            
        733 ATACTCTATTCCTCCCGGGCA
          1 ATACTCTACTCCTCCCGGGCA

                           *     
        754 ATACTCTACTCCTCCGGGGCA
          1 ATACTCTACTCCTCCCGGGCA

             
        775 A
          1 A

        776 ATGGACCCTA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.21, C:0.37, G:0.16, T:0.26


Consensus pattern (21 bp):   
ATACTCTACTCCTCCCGGGCA
Done.