genome.fa.s9596.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009596.1 Kokia drynarioides strain JFW-HI SEQ_124312, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62479

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6385--6475	45	2.0	45	95	0	164	30	13	13	42	1.82
6633--6831	103	1.9	103	83	2	256	36	14	19	30	1.91
12664--12710	18	2.5	19	82	6	60	42	4	19	34	1.70
16456--16576	38	3.2	38	65	17	106	33	9	3	54	1.48
16441--16592	76	2.0	76	98	0	295	32	9	3	53	1.53
23742--23782	18	2.3	19	79	12	50	51	9	0	39	1.35
25216--25241	11	2.4	11	100	0	52	46	0	42	11	1.40
25472--25514	23	1.9	22	85	4	59	30	4	30	34	1.78
26169--28017	40	46.9	39	69	10	622	26	16	23	32	1.96
26169--26892	79	9.2	77	76	9	268	27	17	23	32	1.97
26547--26890	79	4.4	79	84	4	426	28	15	23	32	1.95
26409--28017	39	40.9	38	69	13	562	27	16	23	33	1.96
26929--27182	89	3.0	88	75	17	309	26	18	23	31	1.97
26863--27182	166	1.9	165	96	0	586	26	17	23	32	1.96
26812--27222	205	2.0	206	82	6	494	28	18	21	31	1.97
27269--28017	79	9.5	78	75	7	462	26	16	23	34	1.95
26404--28025	237	6.9	235	73	10	910	27	16	23	33	1.96
27969--28085	60	2.0	60	84	0	153	27	15	22	35	1.94
28039--28114	40	1.9	40	88	0	116	30	13	18	38	1.89
29505--29561	22	2.6	21	80	8	69	0	24	0	75	0.80
34226--34262	11	3.4	11	100	0	74	48	0	43	8	1.32
35182--35221	21	1.9	21	84	0	53	67	5	2	25	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36756--36791	17	2.1	17	89	0	54	8	0	11	80	0.90
37221--37662	45	9.9	45	84	5	533	24	16	24	34	1.95
40414--40459	22	2.1	22	84	4	58	47	4	10	36	1.58
44137--44197	17	3.6	16	75	16	61	75	0	1	22	0.89
44312--44363	24	2.1	25	82	3	61	59	5	7	26	1.48
45873--45968	26	3.5	26	76	15	113	29	6	27	37	1.81
49550--49600	24	2.1	24	88	0	75	37	5	7	49	1.56
49560--49605	24	1.9	24	90	0	74	36	6	8	47	1.60

Tables:   1

The End!