Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009597.1 Kokia drynarioides strain JFW-HI SEQ_124313, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8069
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.35


Found at i:6576 original size:19 final size:19

Alignment explanation


    Indices: 6552--6589  Score: 51
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       6542 TTTATTTCAG

                                
       6552 TTTAATAAATGT-TTGCATT
          1 TTTAAT-AATGTCTTGCATT

                  *            
       6571 TTTAATTATGTCTTGCATT
          1 TTTAATAATGTCTTGCATT

       6590 AAGTGTTTTG


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  18    4  0.24
  19   13  0.76

ACGTcount: A:0.26, C:0.08, G:0.11, T:0.55


Consensus pattern (19 bp):   
TTTAATAATGTCTTGCATT

Found at i:7364 original size:36 final size:36

Alignment explanation


    Indices: 7324--7411  Score: 133
    Period size: 36  Copynumber: 2.4  Consensus size: 36

       7314 TCCAATGACT

                  *                              
       7324 AATGAAAAGACATG-CACTTTCATCTACTCAAAAACA
          1 AATGAAGAGACATGTC-CTTTCATCTACTCAAAAACA

                                            **  
       7360 AATGAAGAGACATGTCCTTTCATCTACTCAAAGGCA
          1 AATGAAGAGACATGTCCTTTCATCTACTCAAAAACA

                            
       7396 AATGAAGAGACATGTC
          1 AATGAAGAGACATGTC

       7412 TTTTGAGCTA


Statistics
Matches: 48,  Mismatches: 3, Indels: 2
        0.91            0.06        0.04

Matches are distributed among these distances:
  36   47  0.98
  37    1  0.02

ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23


Consensus pattern (36 bp):   
AATGAAGAGACATGTCCTTTCATCTACTCAAAAACA
Done.