genome.fa.s9602.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009602.1 Kokia drynarioides strain JFW-HI SEQ_124318, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26107

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2022--2058	3	12.3	3	100	0	74	32	0	0	67	0.91
7561--7609	17	2.8	17	96	3	89	57	12	2	28	1.46
8080--8189	17	6.4	17	87	7	159	40	0	2	55	1.20
8080--8189	35	3.2	34	89	5	159	40	0	2	55	1.20
8112--8189	6	13.5	6	73	17	67	43	1	1	53	1.16
8115--8170	11	4.9	11	78	10	51	37	1	1	58	1.19
8080--8189	52	2.1	52	93	0	184	40	0	2	55	1.20
8237--8308	26	2.9	24	80	12	65	48	29	4	18	1.66
9276--9379	29	3.6	27	77	10	91	35	30	0	32	1.65
9254--9327	30	2.5	29	82	6	94	33	24	4	37	1.74
9276--9379	30	3.6	28	77	12	86	35	30	0	32	1.65
9765--9952	96	1.9	97	82	2	234	30	17	13	38	1.88
12904--12962	29	2.0	29	86	0	82	23	10	32	33	1.88
12993--13070	36	2.2	36	93	4	131	46	14	12	26	1.80
16954--16998	20	2.2	20	84	4	54	31	17	13	37	1.89
17792--18056	58	4.5	57	78	11	216	34	24	2	39	1.68
17796--18258	30	15.8	29	71	15	197	34	25	1	38	1.67
17894--18258	145	2.5	145	78	12	352	33	25	2	38	1.68
17952--18123	86	2.0	87	85	5	233	31	24	2	41	1.68
18039--18258	59	3.7	59	81	7	252	34	27	1	37	1.66
18039--18254	118	1.8	117	86	3	308	34	27	1	36	1.66
18243--18304	28	2.2	28	85	0	79	32	25	11	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19355--19386	3	10.7	3	100	0	64	0	65	0	34	0.93
20403--20448	21	2.2	21	81	14	51	17	26	2	54	1.54
24159--24200	22	1.9	22	95	0	75	40	2	4	52	1.35
24736--24794	12	5.0	12	80	10	68	27	16	11	44	1.83
24736--24795	24	2.5	25	86	7	81	26	16	11	45	1.82
24876--24985	23	4.8	22	85	3	112	28	12	20	39	1.89
24876--24985	46	2.4	46	83	4	132	28	12	20	39	1.89
24951--24996	23	2.0	23	83	8	58	39	10	17	32	1.84

Tables:   1

The End!