Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009605.1 Kokia drynarioides strain JFW-HI SEQ_124321, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 836

Length: 1394
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37


Found at i:464 original size:23 final size:23

Alignment explanation


    Indices: 434--509  Score: 143
    Period size: 23  Copynumber: 3.3  Consensus size: 23

        424 GCTGGGCAAT

                        *          
        434 AGAGAGCACACAAAGTGCTAATC
          1 AGAGAGCACACACAGTGCTAATC

                                   
        457 AGAGAGCACACACAGTGCTAATC
          1 AGAGAGCACACACAGTGCTAATC

                                   
        480 AGAGAGCACACACAGTGCTAATC
          1 AGAGAGCACACACAGTGCTAATC

                   
        503 AGAGAGC
          1 AGAGAGC

        510 GCGCTAGTGT


Statistics
Matches: 52,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  23   52  1.00

ACGTcount: A:0.41, C:0.24, G:0.24, T:0.12


Consensus pattern (23 bp):   
AGAGAGCACACACAGTGCTAATC
Done.