Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009611.1 Kokia drynarioides strain JFW-HI SEQ_124327, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3355
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37


Found at i:1565 original size:26 final size:25

Alignment explanation


    Indices: 1536--1588  Score: 61
    Period size: 26  Copynumber: 2.1  Consensus size: 25

       1526 TACTTTCTTT

                          *  *        
       1536 ATCACTCAATTATTTTTTTTATTTTA
          1 ATCACTCAATTATTATTATT-TTTTA

                * *                  
       1562 ATCATTTAATTATTATTATTTTTTA
          1 ATCACTCAATTATTATTATTTTTTA

              
       1587 AT
          1 AT

       1589 TTGATCACTC


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  25    7  0.30
  26   16  0.70

ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62


Consensus pattern (25 bp):   
ATCACTCAATTATTATTATTTTTTA
Done.