Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009615.1 Kokia drynarioides strain JFW-HI SEQ_124331, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5565
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36

Warning! 46 characters in sequence are not A, C, G, or T


Found at i:4108 original size:14 final size:14

Alignment explanation


    Indices: 4089--4136  Score: 51
    Period size: 14  Copynumber: 3.4  Consensus size: 14

       4079 TCAAAATTTA

                          
       4089 AAAATTATAAAAAT
          1 AAAATTATAAAAAT

                    **    
       4103 AAAATTATTCAAAT
          1 AAAATTATAAAAAT

            *   *         
       4117 TAAAGTATAAAAAT
          1 AAAATTATAAAAAT

            *     
       4131 TAAATT
          1 AAAATT

       4137 CACACTACAT


Statistics
Matches: 27,  Mismatches: 7, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  14   27  1.00

ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33


Consensus pattern (14 bp):   
AAAATTATAAAAAT
Done.