genome.fa.s9621.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009621.1 Kokia drynarioides strain JFW-HI SEQ_124337, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147245

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6437--6474	20	1.9	20	100	0	76	47	13	0	39	1.42
11098--11149	23	2.3	24	80	12	65	59	0	0	40	0.97
11341--11406	23	2.9	23	75	4	62	40	16	7	34	1.77
22713--22738	8	3.2	8	100	0	52	46	0	38	15	1.46
24040--24073	12	2.8	12	90	0	50	0	14	5	79	0.91
26121--26244	50	2.5	50	86	5	171	52	10	4	33	1.54
28141--28253	36	3.2	36	67	20	110	46	0	22	31	1.52
28116--28257	71	2.0	71	100	0	284	43	0	21	35	1.53
28116--28226	36	3.1	36	66	21	106	45	0	19	35	1.51
35907--35971	30	2.2	30	88	5	96	33	16	9	40	1.81
35914--36043	30	4.3	30	75	9	124	31	20	7	40	1.80
40137--40175	13	3.1	13	85	7	53	71	12	12	2	1.24
43695--43741	24	2.0	23	84	12	60	51	10	12	25	1.72
46051--46098	21	2.3	21	85	7	62	27	8	20	43	1.80
55834--55878	23	2.0	23	83	16	58	68	4	15	11	1.34
60687--60762	39	1.9	39	100	0	152	28	19	17	34	1.94
61929--61960	9	3.4	9	95	4	55	81	0	0	18	0.70
61929--61960	5	6.8	5	86	13	50	81	0	0	18	0.70
61984--62636	324	2.0	325	90	1	1033	42	13	10	33	1.78
71156--71202	24	2.0	24	84	12	62	27	12	8	51	1.69
75055--75091	18	2.1	18	89	0	56	24	27	0	48	1.51
81556--81582	12	2.2	12	100	0	54	70	0	14	14	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97296--97327	10	3.1	11	86	13	50	0	15	0	84	0.63
97714--97753	20	2.1	19	86	9	55	67	7	10	15	1.41
102176--102217	21	2.0	21	95	0	75	35	19	7	38	1.79
103913--103960	6	7.8	6	81	4	51	68	2	2	27	1.11
104507--104553	21	2.2	21	96	0	85	29	17	10	42	1.82
138253--138304	16	3.3	15	76	7	59	46	13	7	32	1.72
140084--140116	16	2.0	17	88	5	50	45	12	0	42	1.41
142047--142427	79	4.8	80	83	3	376	31	24	19	24	1.98

Tables:   1

The End!