Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009632.1 Kokia drynarioides strain JFW-HI SEQ_124349, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 937

Length: 1563
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29


Found at i:692 original size:45 final size:45

Alignment explanation


    Indices: 628--840  Score: 311
    Period size: 45  Copynumber: 4.7  Consensus size: 45

        618 GCATAGCTCA

                          *        *      * *            
        628 TCAAGCCAAGGATAGCAGCCTCAGTTTGACAACCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                                  *      
        673 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCACAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                                         
        718 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                                       * 
        763 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                  **           *  * *         
        808 T-ATAGGGAAGGATATCAGGCTGAGTTTGACGAG
          1 TCA-AGCCAAGGATATCAGCCTCAATTTGACGAG

        841 GCATCGCGAT


Statistics
Matches: 155,  Mismatches: 12, Indels: 2
        0.92            0.07        0.01

Matches are distributed among these distances:
  44    1  0.01
  45  154  0.99

ACGTcount: A:0.32, C:0.28, G:0.22, T:0.18


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

Done.