Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009635.1 Kokia drynarioides strain JFW-HI SEQ_124352, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2472
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.29


Found at i:1413 original size:29 final size:29

Alignment explanation


    Indices: 1350--1416  Score: 82
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       1340 ATCAAATACC

                                    * *  
       1350 AAGATTAAATAAAAAATAAAATGATTTAA
          1 AAGATTAAATAAAAAATAAAATGAATAAA

             *           *                
       1379 AGGATTAAATAAATAA-AAAATAGAATAAA
          1 AAGATTAAATAAAAAATAAAAT-GAATAAA

                     
       1408 AAGATTAAA
          1 AAGATTAAA

       1417 ATTTAAGAAA


Statistics
Matches: 32,  Mismatches: 5, Indels: 2
        0.82            0.13        0.05

Matches are distributed among these distances:
  28    5  0.16
  29   27  0.84

ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24


Consensus pattern (29 bp):   
AAGATTAAATAAAAAATAAAATGAATAAA
Done.