Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009636.1 Kokia drynarioides strain JFW-HI SEQ_124353, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43479
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.34
Warning! 5 characters in sequence are not A, C, G, or T
Found at i:650 original size:3 final size:3
Alignment explanation
Indices: 642--672 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
632 TGCCAACATT
642 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
673 CGTTTTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:5856 original size:33 final size:33
Alignment explanation
Indices: 5759--5832 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
5749 AACATAAGTC
** * * *
5759 ATTGGAACAAATATCAGCGAAACTTCATCAATG
1 ATTGGAACATCTATCAGAGAAGCTTCATCATTG
5792 ATTGGAACATCTATCAGAGAAGCTTCATCATTG
1 ATTGGAACATCTATCAGAGAAGCTTCATCATTG
5825 ATTGGAAC
1 ATTGGAAC
5833 GTCTCTAGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (33 bp):
ATTGGAACATCTATCAGAGAAGCTTCATCATTG
Found at i:14403 original size:19 final size:20
Alignment explanation
Indices: 14379--14423 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
14369 AATAATTATA
14379 AAAAATA-TTAAATTATAAT
1 AAAAATATTTAAATTATAAT
* *
14398 AAAAATATTTAAATTTTATT
1 AAAAATATTTAAATTATAAT
14418 AAAAAT
1 AAAAAT
14424 TAGATAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAAATATTTAAATTATAAT
Found at i:16376 original size:161 final size:161
Alignment explanation
Indices: 16111--16434 Score: 648
Period size: 161 Copynumber: 2.0 Consensus size: 161
16101 TTACCTTGTT
16111 GTATTAGAGTGATACTATGATTTTGATGCTTGATACTTTTTTATTGTGGTTCATTTTATTGAATA
1 GTATTAGAGTGATACTATGATTTTGATGCTTGATACTTTTTTATTGTGGTTCATTTTATTGAATA
16176 GATTTTACAATTAAATGTTGCTATTATAATGTTTGAGTGCTTGCAATTTAGTCTAATTATATGAT
66 GATTTTACAATTAAATGTTGCTATTATAATGTTTGAGTGCTTGCAATTTAGTCTAATTATATGAT
16241 ATTTTGCTAGACTTTAGTAGAATACCACTGA
131 ATTTTGCTAGACTTTAGTAGAATACCACTGA
16272 GTATTAGAGTGATACTATGATTTTGATGCTTGATACTTTTTTATTGTGGTTCATTTTATTGAATA
1 GTATTAGAGTGATACTATGATTTTGATGCTTGATACTTTTTTATTGTGGTTCATTTTATTGAATA
16337 GATTTTACAATTAAATGTTGCTATTATAATGTTTGAGTGCTTGCAATTTAGTCTAATTATATGAT
66 GATTTTACAATTAAATGTTGCTATTATAATGTTTGAGTGCTTGCAATTTAGTCTAATTATATGAT
16402 ATTTTGCTAGACTTTAGTAGAATACCACTGA
131 ATTTTGCTAGACTTTAGTAGAATACCACTGA
16433 GT
1 GT
16435 TGTAAAAAGC
Statistics
Matches: 163, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
161 163 1.00
ACGTcount: A:0.28, C:0.09, G:0.17, T:0.46
Consensus pattern (161 bp):
GTATTAGAGTGATACTATGATTTTGATGCTTGATACTTTTTTATTGTGGTTCATTTTATTGAATA
GATTTTACAATTAAATGTTGCTATTATAATGTTTGAGTGCTTGCAATTTAGTCTAATTATATGAT
ATTTTGCTAGACTTTAGTAGAATACCACTGA
Found at i:19009 original size:35 final size:36
Alignment explanation
Indices: 18970--19037 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
18960 TAAATTATTT
* *
18970 GAATAAAT-TTAAATAAGGTTTTACAAAAATATAGA
1 GAATAAATGATAAATAAGGTTTTAAAAAAATATAGA
* *
19005 GAATACATGATAAATAATGTTTTAAAAAAATAT
1 GAATAAATGATAAATAAGGTTTTAAAAAAATAT
19038 CTGTCTTGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 7 0.25
36 21 0.75
ACGTcount: A:0.54, C:0.03, G:0.10, T:0.32
Consensus pattern (36 bp):
GAATAAATGATAAATAAGGTTTTAAAAAAATATAGA
Found at i:21685 original size:23 final size:23
Alignment explanation
Indices: 21657--21710 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
21647 CGTCCATTCT
* *
21657 TGCTGACTAGACCTTTTGGAAGC
1 TGCTGACTAGACCTTCTAGAAGC
* *
21680 TGCTGACTGGATCTTCTAGAAGC
1 TGCTGACTAGACCTTCTAGAAGC
*
21703 TTCTGACT
1 TGCTGACT
21711 GGATGCCACG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.33
Consensus pattern (23 bp):
TGCTGACTAGACCTTCTAGAAGC
Found at i:22538 original size:15 final size:15
Alignment explanation
Indices: 22518--22561 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
22508 AATAGTTTTC
* *
22518 TCTTTTTTTTGTTGT
1 TCTTTTTTTTCTTCT
*
22533 TCTTTTCTTTCTTCT
1 TCTTTTTTTTCTTCT
22548 T-TTTTTTTTCTTCT
1 TCTTTTTTTTCTTCT
22562 GTATTCGAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.00, C:0.16, G:0.05, T:0.80
Consensus pattern (15 bp):
TCTTTTTTTTCTTCT
Found at i:23473 original size:18 final size:16
Alignment explanation
Indices: 23437--23487 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 16
23427 CCAAAAATAA
* *
23437 AAATAAATAGA-AATA
1 AAATAAATAAATAATG
23452 AAATAATATAAATAACTG
1 AAATAA-ATAAATAA-TG
*
23470 AAATAAATTAATAATG
1 AAATAAATAAATAATG
23486 AA
1 AA
23488 GTATAAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 6 0.20
16 8 0.27
17 9 0.30
18 7 0.23
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (16 bp):
AAATAAATAAATAATG
Found at i:23476 original size:23 final size:24
Alignment explanation
Indices: 23432--23483 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
23422 AAATACCAAA
23432 AATAAAAATAAATAGAAATAAAAT
1 AATAAAAATAAATAGAAATAAAAT
* * *
23456 AATATAAATAACT-GAAATAAATT
1 AATAAAAATAAATAGAAATAAAAT
23479 AATAA
1 AATAA
23484 TGAAGTATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (24 bp):
AATAAAAATAAATAGAAATAAAAT
Found at i:35865 original size:535 final size:532
Alignment explanation
Indices: 34505--36623 Score: 3474
Period size: 536 Copynumber: 4.0 Consensus size: 532
34495 CTATTTGCAT
*
34505 TTTTCCTCTTTATTTTTCAAGCAATTAAGGATGGGAACCAAGTTAGTATGAA-AATTAAATATGG
1 TTTTCCTCTTTATTTTTCAAGCAATTAAGCATGGGAACCAAGTTAGTAT-AAGAATTAAATATGG
** * *
34569 TAAAAAAAATAATATGGGCAATAGTCCA-ACAGTTAAGCTTGCTCTTTTAATTTCGACAGAATGG
65 TAAAAAAAATAATATAAGCAATAGCCCATA-AGTTAAGCTTGCTCTTTTGATTTCGACAGAATGG
* * * *
34633 ATTAATTACCAAAATATG-CCTCTGAAGTTTGTTTAATGTTTCCATTTAGTTCTTATCCTAATAA
129 ATTAATTACCAAAATA-GCCCTCTAAAGTTTGCTTAATATTGCCATTTAGTTCTTATCCTAATAA
*
34697 TAATAGGATTTTGATTATTTTTTTCAAACTTATCTAGAATTCATCTCTTATTCTTCTTCAAAGTT
193 TAATAGGATTTTGATTATTTTTCTCAAACTTATCTAGAATTCATCTCTTATTCTTCTTCAAAGTT
34762 CAAATAAAATTAAAATTTCATTATCTTTTTAACTACTTATCGTATTTGAAATTCAAATTACTCAT
258 CAAATAAAATTAAAATTTCATTATCTTTTTAACTACTTATCGTATTTGAAATTCAAATTACTCAT
* *
34827 TTTCAAATCTTAAAAGAATATATTTTTCTTATTTCTATTTATTATTTATTATTCCCCATTTGTTA
323 TTTCAAATCTTAATAGAGTATATTTTTCTTATTTCTATTTATTATTTATTATTCCCCATTTGTTA
*
34892 TTTTATCAAATTAAAACCCTAAACTCTCTCTCTCTATATATATTTATATTCTAGTTTTCTCTCAA
388 TTTTATCAAATTAAAACCCTAAA--CTCTCTCTC--TATATATTTATATTCTAGTTTCCTCTC-A
*
34957 AAATTTT-TATTCCAAAACTCTTTTAAACCCTTAAGTTTTGCTGAAAAAATATT-TTTAAAATTT
448 AAATTTTCTATTCCAAAACTCTTTTAAGCCCTTAAGTTTTGCTGAAAAAATATTCTTT-AAATTT
*
35020 TTT-AATTTCAATCAATTAAG
512 TTTAAAATTCAATCAATTAAG
* * *
35040 TTTCCCTCTTTATTTTTCAAGCAATTAAGGATGGGAACCAAGTTAGCATAAGAATTAAATATGGT
1 TTTTCCTCTTTATTTTTCAAGCAATTAAGCATGGGAACCAAGTTAGTATAAGAATTAAATATGGT
**
35105 AAAAAGAAATAATATGGGCAATAGCCCATAAGTTAAGCTTGCTCTTTTGATTTCGACAGAATGGA
66 AAAAA-AAATAATATAAGCAATAGCCCATAAGTTAAGCTTGCTCTTTTGATTTCGACAGAATGGA
* *
35170 TTACTTACCAAAATAGCCCTCTAAAGTTTGCTTAATGTTGCCATTTAG----T-T-C---T--T-
130 TTAATTACCAAAATAGCCCTCTAAAGTTTGCTTAATATTGCCATTTAGTTCTTATCCTAATAATA
35223 AT--GATTTTGATTATTTTTCTCAAACTTATCTAGAATTCATCTCTTATTCTTCTTCAAAGTTCA
195 ATAGGATTTTGATTATTTTTCTCAAACTTATCTAGAATTCATCTCTTATTCTTCTTCAAAGTTCA
* *
35286 AATAAAATTAAAATTTCATTATCTTGTTAACTACTTATCGTATTTGAAATTCATATTACTCATTT
260 AATAAAATTAAAATTTCATTATCTTTTTAACTACTTATCGTATTTGAAATTCAAATTACTCATTT
*
35351 TCAAATCTTAATAGAATATATTTTTCTTATTTCTATTTATTATTTATTATTCCCCATTTGTTATT
325 TCAAATCTTAATAGAGTATATTTTTCTTATTTCTATTTATTATTTATTATTCCCCATTTGTTATT
*
35416 TTATAAAATTAAAACCCTAAACTCTCTCTCTATATATTTATATTCTAGTTTCCTCTCAAAATTTT
390 TTATCAAATTAAAACCCTAAACTCTCTCTCTATATATTTATATTCTAGTTTCCTCTCAAAATTTT
35481 CTATTCCAAAACTCTTTTAAGCCCTTAAGTTTTGCTGAAAAAATATTCTTTAAATTTTTTAAAAT
455 CTATTCCAAAACTCTTTTAAGCCCTTAAGTTTTGCTGAAAAAATATTCTTTAAATTTTTTAAAAT
35546 TCAATCAATTAAG
520 TCAATCAATTAAG
35559 TTTTCCTCTTTATTTTTCGAA-CAATTAAGCATGGGAACCAAGTTAGTATAAGAATTAAATATGG
1 TTTTCCTCTTTATTTTTC-AAGCAATTAAGCATGGGAACCAAGTTAGTATAAGAATTAAATATGG
35623 TAAAAAAAATAATATAAGCAATAGCCCA-ACAGTTAAGCTTGCTCTTTTGATTTCGACAGAATGG
65 TAAAAAAAATAATATAAGCAATAGCCCATA-AGTTAAGCTTGCTCTTTTGATTTCGACAGAATGG
* *
35687 ATTAATTACCAAAATATCCCTCTAAAGTTTGCTTAATATTTCCATTTAGTTCTTATCCTAATAAT
129 ATTAATTACCAAAATAGCCCTCTAAAGTTTGCTTAATATTGCCATTTAGTTCTTATCC---TAAT
35752 AATAATAGGATTTTGATTATTTTTCTCAAACTTATCTAGAATTCATCTCTTATTCTTCTTCAAAG
191 AATAATAGGATTTTGATTATTTTTCTCAAACTTATCTAGAATTCATCTCTTATTCTTCTTCAAAG
35817 TTCAAATAAAATTAAAATTTCATTATCTTTTTAACTACTTATCGTATTTGAAATTCAAATTACTC
256 TTCAAATAAAATTAAAATTTCATTATCTTTTTAACTACTTATCGTATTTGAAATTCAAATTACTC
* **
35882 ATTTTCAAATCTTAATAGAGTACATTTTTCTTATTTCTATTTATTATTTATTATTCTACATTTGT
321 ATTTTCAAATCTTAATAGAGTATATTTTTCTTATTTCTATTTATTATTTATTATTCCCCATTTGT
*
35947 TATTTTATCAAATTAAAACCCTAAGCTCTCTCTCTCTCAATATATTTATATTCTAGTTTCCTCTC
386 TATTTTATCAAATTAAAACCCTAA--ACTCTCTCTCT--ATATATTTATATTCTAGTTTCCTCTC
*
36012 AAAATTTTCTGTTCCAAAACTCTTTTAAGCCCTTAAGTTTTGCTGAAAAAATATTCTTTAAATTT
447 AAAATTTTCTATTCCAAAACTCTTTTAAGCCCTTAAGTTTTGCTGAAAAAATATTCTTTAAATTT
*
36077 TTTAAAATTCAATCAGTTAAG
512 TTTAAAATTCAATCAATTAAG
*
36098 TTTTCCTCTTTATTTTTCAAGCAATTAAGGATGGGAACCAAGTTAGTATAAGAATTAAATATGGT
1 TTTTCCTCTTTATTTTTCAAGCAATTAAGCATGGGAACCAAGTTAGTATAAGAATTAAATATGGT
** *
36163 AAAAAAAATAATATGGGCAATCGCCCATAAGTTAAGCTTGCTCTTTTGATTTCGACAGAATGGAT
66 AAAAAAAATAATATAAGCAATAGCCCATAAGTTAAGCTTGCTCTTTTGATTTCGACAGAATGGAT
*
36228 TACTTACCAAAATAGCCCTCTAAAGTTTGCTTAATATTGCCATTTAGTTCTTATCCTAATAATAA
131 TAATTACCAAAATAGCCCTCTAAAGTTTGCTTAATATTGCCATTTAGTTCTTATCCTAATAATAA
* * *
36293 TAGGATTTTGATTGTTTTTCTCAACCTTATCTAGAATTCATCTTTTATTCTTCTTCAAAGTTCAA
196 TAGGATTTTGATTATTTTTCTCAAACTTATCTAGAATTCATCTCTTATTCTTCTTCAAAGTTCAA
* *
36358 ATAAAATTAAATTTTCATTATCTTTTTAACTAATTATCGTATTTGAAATTCAAATTACTCATTTT
261 ATAAAATTAAAATTTCATTATCTTTTTAACTACTTATCGTATTTGAAATTCAAATTACTCATTTT
36423 CAAATCTTAATAGAGTATATTTTTCTTATTTCTATTTATTATTTATTATTCCCCATTTGTTATTT
326 CAAATCTTAATAGAGTATATTTTTCTTATTTCTATTTATTATTTATTATTCCCCATTTGTTATTT
* * * *
36488 TATCAAATTAAAACCCTAAACTCTCTCTCTCTATCTATATATTCTAGTTTCCTCTAAAAATTTTC
391 TATCAAATTAAAACCCTAAACTCTCTCTCTATATATTTATATTCTAGTTTCCTCTCAAAATTTTC
36553 TATTCCAAAACTCTTTTAAGCCCTTAAGTTTTGCT-AAAAAATATTCTTTAAATTTTTTAAAATT
456 TATTCCAAAACTCTTTTAAGCCCTTAAGTTTTGCTGAAAAAATATTCTTTAAATTTTTTAAAATT
36617 CAATCAA
521 CAATCAA
36624 GCCCTAATCA
Statistics
Matches: 1495, Mismatches: 57, Indels: 68
0.92 0.04 0.04
Matches are distributed among these distances:
517 9 0.01
518 179 0.12
519 83 0.06
520 11 0.01
522 208 0.14
523 1 0.00
524 3 0.00
525 1 0.00
527 1 0.00
530 2 0.00
531 36 0.02
532 67 0.04
533 2 0.00
534 12 0.01
535 270 0.18
536 312 0.21
537 11 0.01
538 2 0.00
539 284 0.19
540 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.08, T:0.43
Consensus pattern (532 bp):
TTTTCCTCTTTATTTTTCAAGCAATTAAGCATGGGAACCAAGTTAGTATAAGAATTAAATATGGT
AAAAAAAATAATATAAGCAATAGCCCATAAGTTAAGCTTGCTCTTTTGATTTCGACAGAATGGAT
TAATTACCAAAATAGCCCTCTAAAGTTTGCTTAATATTGCCATTTAGTTCTTATCCTAATAATAA
TAGGATTTTGATTATTTTTCTCAAACTTATCTAGAATTCATCTCTTATTCTTCTTCAAAGTTCAA
ATAAAATTAAAATTTCATTATCTTTTTAACTACTTATCGTATTTGAAATTCAAATTACTCATTTT
CAAATCTTAATAGAGTATATTTTTCTTATTTCTATTTATTATTTATTATTCCCCATTTGTTATTT
TATCAAATTAAAACCCTAAACTCTCTCTCTATATATTTATATTCTAGTTTCCTCTCAAAATTTTC
TATTCCAAAACTCTTTTAAGCCCTTAAGTTTTGCTGAAAAAATATTCTTTAAATTTTTTAAAATT
CAATCAATTAAG
Found at i:37017 original size:86 final size:87
Alignment explanation
Indices: 36887--37069 Score: 203
Period size: 86 Copynumber: 2.1 Consensus size: 87
36877 CTATTTTTTT
* * * *
36887 AGATTTTACAGTTTTGTCATTGGATTTCAAGATTTTACAGTTCTACCATT-G-TTTTCTAGAAAT
1 AGATTTTACAATTCTGACATTGGATTTCAAGATTTTACAATTCTACCATTGGTTTTTC-A-AAAT
* *
36950 TTATAGTTTTGCTACTAATTTTCC
64 TTATAGTTCTGCCACTAATTTTCC
* *
36974 AGATTTTACAATTCTGACATT-GCTTTCCAA-ATTTTACAATTCTACCCTTGGTTTTTCAAAATT
1 AGATTTTACAATTCTGACATTGGATTT-CAAGATTTTACAATTCTACCATTGGTTTTTCAAAATT
* * *
37037 TTTTGTTCTGCCACTATTTTTCC
65 TATAGTTCTGCCACTAATTTTCC
*
37060 ATATTTTACA
1 AGATTTTACA
37070 TTTTTGCCAC
Statistics
Matches: 81, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
86 53 0.65
87 23 0.28
88 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.48
Consensus pattern (87 bp):
AGATTTTACAATTCTGACATTGGATTTCAAGATTTTACAATTCTACCATTGGTTTTTCAAAATTT
ATAGTTCTGCCACTAATTTTCC
Found at i:37065 original size:28 final size:27
Alignment explanation
Indices: 37025--37111 Score: 70
Period size: 28 Copynumber: 3.1 Consensus size: 27
37015 CTACCCTTGG
37025 TTTTTCAAAATTTT-TTGTTCTGCCACTA
1 TTTTTCAAAATTTTATT-TT-TGCCACTA
* *
37053 TTTTTCCATATTTTACATTTTTGCCACTA
1 TTTTTCAAAATTTT--ATTTTTGCCACTA
* *
37082 TTTTTC-AGATTTTACAATTTTGCCACTA
1 TTTTTCAAAATTTT--ATTTTTGCCACTA
37110 TT
1 TT
37112 CTTAAAAAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
28 34 0.65
29 14 0.27
30 2 0.04
31 2 0.04
ACGTcount: A:0.22, C:0.18, G:0.06, T:0.54
Consensus pattern (27 bp):
TTTTTCAAAATTTTATTTTTGCCACTA
Found at i:37078 original size:29 final size:28
Alignment explanation
Indices: 37045--37111 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
37035 TTTTTTGTTC
* *
37045 TGCCACTATTTTTCCATATTTTACATTTT
1 TGCCACTATTTTT-CAGATTTTACAATTT
37074 TGCCACTATTTTTCAGATTTTACAATTT
1 TGCCACTATTTTTCAGATTTTACAATTT
37102 TGCCACTATT
1 TGCCACTATT
37112 CTTAAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
28 23 0.64
29 13 0.36
ACGTcount: A:0.22, C:0.21, G:0.06, T:0.51
Consensus pattern (28 bp):
TGCCACTATTTTTCAGATTTTACAATTT
Found at i:37094 original size:86 final size:86
Alignment explanation
Indices: 36911--37100 Score: 195
Period size: 86 Copynumber: 2.2 Consensus size: 86
36901 TGTCATTGGA
* * *
36911 TTTCAAGATTTTACAGTTCTACCATTGTTTTCTAGAAATTTATAGTTTTGCTACTAATTTTCCAG
1 TTTC-AGATTTTACAATTCTACCATTGTTTTCTAGAAATTTATAGTTCTGCCACTAATTTTCCAG
* *
36976 ATTTTACAATTCTGACATTGCT
65 ATTTTACAATTCTGACACTACT
* * * * * *
36998 TTCCAAATTTTACAATTCTACCCTTGGTTTT-TCA-AAATTTTTTGTTCTGCCACTATTTTTCCA
1 TTTCAGATTTTACAATTCTACCATT-GTTTTCT-AGAAATTTATAGTTCTGCCACTAATTTTCCA
* * * * *
37061 TATTTTACATTTTTGCCACTATT
64 GATTTTACAATTCTGACACTACT
37084 TTTCAGATTTTACAATT
1 TTTCAGATTTTACAATT
37101 TTGCCACTAT
Statistics
Matches: 83, Mismatches: 18, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
86 74 0.89
87 9 0.11
ACGTcount: A:0.25, C:0.18, G:0.08, T:0.49
Consensus pattern (86 bp):
TTTCAGATTTTACAATTCTACCATTGTTTTCTAGAAATTTATAGTTCTGCCACTAATTTTCCAGA
TTTTACAATTCTGACACTACT
Done.