Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009637.1 Kokia drynarioides strain JFW-HI SEQ_124354, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3229
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37


Found at i:107 original size:12 final size:12

Alignment explanation


    Indices: 90--123  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

         80 ATAAAAGAAT

                        
         90 AAAGAAAGAAAA
          1 AAAGAAAGAAAA

                   *    
        102 AAAGAAACAAAA
          1 AAAGAAAGAAAA

            *         
        114 GAAGAAAGAA
          1 AAAGAAAGAA

        124 CAGAGGCTCA


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00


Consensus pattern (12 bp):   
AAAGAAAGAAAA
Done.