Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000964.1 Kokia drynarioides strain JFW-HI SEQ_112144, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14270
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34


Found at i:4721 original size:7 final size:7

Alignment explanation


    Indices: 4709--4734  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

       4699 TTTCTGGGTC

                   
       4709 TTTTTCT
          1 TTTTTCT

                   
       4716 TTTTTCT
          1 TTTTTCT

                   
       4723 TTTTTCT
          1 TTTTTCT

                 
       4730 TTTTT
          1 TTTTT

       4735 TTATTATTCC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88


Consensus pattern (7 bp):   
TTTTTCT

Found at i:7000 original size:7 final size:7

Alignment explanation


    Indices: 6988--7012  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       6978 TATATAATTT

                   
       6988 TATTATA
          1 TATTATA

                   
       6995 TATTATA
          1 TATTATA

                   
       7002 TATTATA
          1 TATTATA

                
       7009 TATT
          1 TATT

       7013 TAAAATTTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60


Consensus pattern (7 bp):   
TATTATA
Done.