genome.fa.s9651.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009651.1 Kokia drynarioides strain JFW-HI SEQ_124369, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  254301

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
847--892	23	2.0	23	86	4	65	41	2	0	56	1.11
1241--1287	22	2.1	22	96	0	85	34	8	21	36	1.84
11277--12029	392	1.9	391	90	0	1184	29	26	12	31	1.93
20430--20482	20	2.7	20	82	2	72	37	0	1	60	1.08
37526--37559	3	11.3	3	100	0	68	64	0	0	35	0.94
38334--38368	6	5.8	6	96	0	61	0	20	31	48	1.50
40578--40627	22	2.3	22	86	6	66	2	6	24	68	1.23
40673--40772	24	4.2	24	81	6	123	6	5	20	69	1.29
40663--40752	48	1.9	48	86	4	130	8	4	17	68	1.32
40673--40801	47	2.7	47	82	1	132	7	6	19	66	1.38
40673--40772	12	8.4	12	78	6	96	6	5	20	69	1.29
45322--45398	23	3.2	23	71	10	82	45	7	3	42	1.51
60507--60739	30	7.8	30	66	17	103	37	3	27	31	1.72
60507--60800	59	4.9	60	77	5	231	37	3	26	32	1.73
60582--60822	30	8.1	30	72	13	140	36	2	27	34	1.69
61848--61890	3	14.7	3	83	13	54	32	2	0	65	1.06
61903--61928	12	2.2	12	100	0	52	30	7	11	50	1.67
62564--62614	24	2.2	23	82	10	59	27	5	19	47	1.73
62643--62748	17	6.2	17	80	2	113	53	3	0	42	1.18
63060--63489	201	2.2	194	85	4	558	23	21	18	36	1.95
74566--74737	60	2.9	61	81	6	208	42	4	21	31	1.73
74600--74692	30	3.1	29	73	21	93	45	4	22	27	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74517--74784	119	2.2	121	76	10	280	41	3	23	32	1.72
74580--74769	59	3.2	58	83	8	231	42	4	22	30	1.72
74581--74739	29	5.4	29	73	12	126	44	5	21	29	1.73
74715--74785	30	2.3	31	78	9	74	40	2	26	29	1.70
76537--76643	35	3.1	34	83	4	115	52	4	0	42	1.22
76537--76628	6	15.8	6	70	10	66	53	3	0	43	1.17
76538--76593	29	1.9	29	85	7	78	51	3	0	44	1.18
76537--76643	17	6.2	17	81	3	124	52	4	0	42	1.22
76946--76989	18	2.6	17	85	7	54	61	0	0	38	0.96
79426--79573	75	2.0	75	94	0	260	29	19	10	41	1.84
79790--79844	24	2.3	24	90	0	92	38	16	29	16	1.90
98881--98914	15	2.2	16	89	5	52	23	14	11	50	1.76
99528--99587	17	3.4	17	81	4	66	48	1	3	46	1.28
100276--100315	20	2.0	20	100	0	80	50	0	0	50	1.00
101330--101454	29	4.3	29	75	2	117	35	26	3	35	1.73
101322--101580	58	4.5	59	80	7	248	32	28	3	35	1.73
101360--101572	115	1.9	114	82	10	274	33	28	3	34	1.75
102482--102510	3	9.7	3	100	0	58	34	0	0	65	0.93
102829--102866	3	13.3	3	83	10	53	71	0	28	0	0.87
102829--102866	20	1.9	20	89	10	60	71	0	28	0	0.87
103376--103414	18	2.2	18	86	9	53	2	0	25	71	0.98
107788--107855	23	2.9	23	77	2	82	27	10	17	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109331--109385	24	2.2	25	90	3	85	58	3	0	38	1.16
127107--127189	39	2.1	39	88	0	121	42	14	18	25	1.88
128598--128623	3	8.7	3	100	0	52	34	34	30	0	1.58
130075--130103	2	14.5	2	100	0	58	51	0	0	48	1.00
139661--139727	18	3.6	18	72	18	64	0	53	0	46	1.00
139653--139745	21	4.3	21	75	15	82	1	51	0	47	1.07
139659--139768	39	2.8	39	82	8	118	2	49	0	48	1.15
139701--139756	18	2.9	19	84	10	62	3	46	0	50	1.19
139653--139792	66	2.1	66	80	5	149	2	47	0	49	1.16
139855--139879	6	4.2	6	100	0	50	0	36	0	64	0.94
147252--147295	24	1.9	22	86	9	61	31	0	9	59	1.29
149834--149998	31	5.4	31	68	19	94	50	10	13	25	1.74
161372--161444	23	3.2	23	84	3	85	16	20	23	39	1.92
161383--161493	23	4.8	23	80	2	125	14	18	25	41	1.89
169543--169580	20	1.9	20	88	0	58	50	2	0	47	1.15
170379--171345	282	3.4	282	91	3	1516	23	17	18	40	1.91
176638--176733	41	2.3	41	94	0	174	37	28	4	30	1.76
176722--176760	17	2.3	17	86	0	51	48	23	10	17	1.78
180199--180238	18	2.2	18	100	0	80	40	17	30	12	1.86
196888--196957	37	1.9	36	82	8	88	54	1	2	41	1.24
197735--197778	18	2.4	18	82	10	54	45	0	2	52	1.13
197740--197784	19	2.3	20	81	14	58	40	0	4	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197773--197810	20	2.0	20	84	5	51	42	2	7	47	1.46
201061--201117	16	3.4	16	74	25	64	42	19	10	28	1.84
201059--201129	34	2.1	34	100	0	142	39	21	12	26	1.89
201058--201110	17	3.1	18	72	27	60	37	20	13	28	1.90
201067--201124	19	3.3	19	72	18	70	41	20	12	25	1.87
201072--201125	15	3.3	15	73	26	56	40	20	11	27	1.86
204185--204231	24	2.0	24	86	0	67	23	12	10	53	1.70
208887--208932	22	2.1	22	88	8	67	45	0	21	32	1.52
211207--211453	135	1.8	134	86	2	361	20	14	23	41	1.89
224222--224270	16	2.9	16	77	16	55	51	4	0	44	1.20
224603--224671	28	2.4	30	83	11	90	47	0	0	52	1.00
229925--229974	25	2.0	25	84	7	66	54	2	2	42	1.23
242135--242177	6	7.0	6	89	5	68	81	0	2	16	0.79
243318--243368	21	2.4	21	90	0	75	27	13	13	45	1.82
243329--243375	21	2.2	21	84	0	58	34	12	17	36	1.87
248409--248459	23	2.3	23	89	3	77	41	23	19	15	1.90
248476--248529	23	2.3	23	90	0	90	42	22	24	11	1.85

Tables:   1

The End!