Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009655.1 Kokia drynarioides strain JFW-HI SEQ_124373, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4305
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Found at i:418 original size:216 final size:216
Alignment explanation
Indices: 4--4057 Score: 3835
Period size: 216 Copynumber: 18.8 Consensus size: 216
1 ATC
* * * * * * *
4 CTTCGAGCAA-TATTCTGAACATTCAATGCTCGGGAAATCACATCATTAGGTCAAAATAGTTTGC
1 CTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGT
** * * ** * * *
68 CATTTCTAAAAAAAACTGTTGGTCACTGAATTAAATACTTA-TTATGTGTA-AATTGTTTATCTC
65 CATTT-TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AGAATTGTTTCTCTC
* ** ** * * * *
131 TTGGTTCTTGGACGAACTT-TCGAACAAGAAAAACTTTTACTATTTCTGTTATAACTTCAGTTCC
128 TTGGTTCTTAGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * *
195 ATAAAGTATTCAAGATGATCCGTTT
192 TTAAAGTATTCAAGACGATCCATTT
* * *
220 GTTCGAGCAATTTTTCGAACATTCAATGCTCGAGAAATCGCATCATTTGATCTAAATAGTTTGTC
1 CTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC
*
285 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGCGAGAATTGTTTCTCTCTTG
66 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* * *
350 GTTCTTAGACGAACTTCTGAACTTTTCAAACATTTACGAGTTCTTTTATGACATT-GGTTCCTTA
131 GTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTTA
* *
414 AAGTATTTAAGGCGATCCA-TT
195 AAGTATTCAAGACGATCCATTT
* * * * * * *
435 CTTTC-AACAAATATTCTAAACATTCCATGCTCGAGAAATCGCATCATTCGGCCTAAATATTTTG
1 C-TTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTG
* *
499 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGGGAATTGTTTCTCTCT
64 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * * * * *
564 TAGATCTTGGATGAACTTCTGAACTTGTCAAACTTTTACGAGTCCATTTACAACTTAGGTTCCTT
129 TGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * *
629 AAAGCATTCTATG-CGATCCATTC
194 AAAGTATTC-AAGACGATCCATTT
* ** * ** * **
652 CTTCTAAAAATTTTTTGAACATTGAATGTTCG-GTAAATCGCATCATTTAATCTAAATAGTTTGT
1 CTTCGAGCAATTTTTCGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTGT
* *
716 CATTTTGTAAACAACTTTTGGTCTTTG----------------ACGTGGGATTTGTTTCTCTCTT
65 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * *
765 GGTTCTTAAATGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATGACATT-GGTTCCTT
130 GGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTT
*
829 AAAGTATTCAAGGCGATCCA-TT
194 AAAGTATTCAAGACGATCCATTT
* * * * * *
851 CTTTCAAGCAATATTCCAAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATATTTTGT
1 C-TTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGT
*
916 CATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAACTTATTTACGCGAGAATTGTTTCTCTCTT
65 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * * * * *
980 AGATCTTGGATGAACTTCTGAATTTGTGAAACTTTTACGAGTCCTTTTACAACTTAGGTTCCTTA
130 GGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * *
1045 AAGCATTCTATG-CGATCCATTC
195 AAGTATTC-AAGACGATCCATTT
* * ** * *
1067 CTTCTA-CAAATTGTTCGAACATTGAATGTTCG-GTAAATCGCATCATTTGATCTAAATAGTTTG
1 CTTCGAGC-AATTTTTCGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTG
* * * *
1130 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTAATTGACGTGGGATTTGTTTCTCTCT
64 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * * *
1195 TGGTTCTTAAATGAACTTCTGAAGTTTTCAAGCTTTTACGAGTTCTTTTATGACATT-GGTTCCT
129 TGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCT
* *
1259 CAAAGTATTCAAGGCGATCCA-TT
193 TAAAGTATTCAAGACGATCCATTT
* * * * * * *
1282 CTTTCAATCAATATTCCAAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATATTTTGT
1 C-TTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGT
*
1347 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGCGAGAATTGTTTCTCTCTT
65 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * *
1412 GGTTCTTAGACGAACTTCTGAACTTTTCAAACATTTACGAGTTCTTTTATGACATT-GGTTCCTT
130 GGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTT
* *
1476 AAAGTATTTAAGGCGATCCA-TT
194 AAAGTATTCAAGACGATCCATTT
* * * * * * *
1498 CTTTC-AACAAATATTCTAAACATTCCATGCTCGAGAAATCGCATCATTCGGCCTAAATATTTTG
1 C-TTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTG
1562 TCA-TTTGTAAACAACTTTTGGT-TTTGGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
64 TCATTTTGTAAACAACTTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * * * * * *
1625 TTAGATCCTGGATGAACATT-TGAACTTGTCAAACTTTTACGAGTCCTTTTACAACTTAGGTTCC
128 TTGGTTCTTAGACGAAC-TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * *
1689 ATAAAGCATTCTATG-CGATCCATTC
192 TTAAAGTATTC-AAGACGATCCATTT
* * * ** * **
1714 CCTCTA-CAAATTGTTCGAACATTGAATGTTCG-GTAAATCGCATCATTTGACCTAAATAGTTTG
1 CTTCGAGC-AATTTTTCGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTG
* * *
1777 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTGACGTGGGATTTGTTTCTCTCT
64 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * * *
1842 TGGTTCTTCGACGAAAC-TCCGGACTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCAGTTCCT
129 TGGTTCTTAGACG-AACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * *
1906 TGAAGTGTATTATATATAAATGATCC-TCTT
193 T-AA-AGTA-T-T-CA-AGACGATCCAT-TT
* * ** * *
1936 CATCGAGCAATTTTT-GAACATTCCATTCTCCGA-AAATCAAATCTTTTGGTTTAAATAGTTTGT
1 CTTCGAGCAATTTTTCGAACATTCCATGCT-CGAGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * * * * * *
1999 CATTTTGTAAATAACTTTTGGACTTTGAATTAAGAACTTATTTATGTGAAAATTGTCTCTCTATT
65 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * ** *
2064 GGTTTTTGGACGAACTACCGAACTTGTAAAACTTTTAATAGTTATTTTATAACTTCGGTTCCTTA
130 GGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
*
2129 AAGTATTCAAGACCATCCATTT
195 AAGTATTCAAGACGATCCATTT
* * * * * *
2151 CTACGAGCAATTTTCCAAACATTCCATGCTCGAGAAATTGCATCTTTTGGTCTAAGTAGTTTGTC
1 CTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* * ** **
2216 ATTTTGAAAACCAAGTTTTGGTCTTCAAACAAAAAACTTATTTACGTGAGAATTGTTTCTC-CTT
66 ATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-T
* * * *
2280 TGGTTCTTAGACGAACTTCTGAACTAGTCAAGCTTTTTACGAGTTCTTTTATAACTTTGGTCCCT
129 TGGTTCTTAGACGAACTTCTGAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTTCGGTTCCT
*
2345 TAAAGTATTCAAGACGATCCATTC
193 TAAAGTATTCAAGACGATCCATTT
* * * ** * *
2369 CTTCGATCAATATTCCGAACATTCTGTGCTCGGGAAATCGCATCATTCGGTCTAAATAGTTTGTC
1 CTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* * * * *
2434 ATTTTGGAAACAACTTTTTGGTCCTTGAATTAAAAA-TATATTTATGTGAGAATTTTTTCTCTTT
66 ATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCT
** * * * * * * *
2498 TCATTCTTAGACAAACTTCTGAACTTGTCAAGCTTTTACTATTTCTCCTAATAACTTCGGTTGCT
129 TGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCT-TTTATAACTTCGGTTCCT
* * * *
2563 TAAACTATTCAAGATGATCCAATC
193 TAAAGTATTCAAGACGATCCATTT
* * * * *
2587 CTTCGAGCAA-TATTCTGAACATTCAATGCTCGGGAAATCGCATCATTCGGTCAAAATAGTTTG-
1 CTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * * * ** * * * *
2650 CCTTTTCTTAAAAAAACTGTTGGTCACTGAATTAAATACTTATTTATGTGTA-AATTGTTTATGT
65 CATTTT-GT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AGAATTGTTTCTCT
* * * * * * * * *
2714 CTTGGTTCATGGACGAACTT-TCGAACTAG-GAAAATTTTACTATTTCTGTTATAACTTCAGTTC
127 CTTGGTTCTTAGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * *
2777 CATAAAGTATTCAAGATGATCCGTTT
191 CTTAAAGTATTCAAGACGATCCATTT
* * *
2803 GTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCACTTGGTCTAAATAGTTTGTC
1 CTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC
*
2868 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGCGAGAATTGTTTCTCTCTTG
66 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* *
2933 GTTCTTAGACGAACTTCTGAACTTTTCAAACTTTTACGAGTTCTTTTATGACATT-GGTTCCTTA
131 GTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTTA
* *
2997 AAGTATTTAAGGCGATCCA-TT
195 AAGTATTCAAGACGATCCATTT
* * * * * * * *
3018 CTTTC-AACAAATATTCTAAACATTCCATGCTCGAGAAATCGGATCATTCGGCCTAAATATTTTG
1 C-TTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTG
* *
3082 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCC
64 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * * * * * *
3147 TAGATCCTGGATGAACTTCTGAACTTGTCAAACTTTTACGAGTCCTTTTACAACTTAGGTTCCTC
129 TGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * *
3212 AAAGCATTCTATG-CGATCCATTC
194 AAAGTATTC-AAGACGATCCATTT
* * * * *
3235 CTTCTA-CAAATTTTTCGAACATTCAACGTTCG-GAAAATCGCATCATTTGATCTAAATAGTTTG
1 CTTCGAGC-AATTTTTCGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTG
* * * ** *
3298 TCATTTTGTGAACAACTTTTGGTCTTCGAATTAAAAACTTATTGACGTGAGGTTTGTTTCTTTCT
64 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * * * *
3363 TGGTTCTTGGACGAACCTCCGGACTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCTGTTCCTT
129 TGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * *
3428 GAAGTGTATTATATATAAATGATCCACTT
194 -AA-AGTA-T-T-CA-AGACGATCCATTT
* * ** * *
3457 CATCGAGCAA-TTTTCGAACATTCCATTCTCCGA-AAATCAAATCTTTTGGTTTAAATAGTTTGT
1 CTTCGAGCAATTTTTCGAACATTCCATGCT-CGAGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * * * * *
3520 CATTTTGTAAATAACTTTTGGTCTTTGAATTAAGAATTTATTTATGTGAAAATTGTCTCTCTCTT
65 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * * * *
3585 CGTTTTTGGACAAACTACCGAACTTGTAAAACTTTTACGAGTTATTTTATAACTTCGGTTCCTTA
130 GGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* *
3650 AAGTATTCAAGACCATCCGTTT
195 AAGTATTCAAGACGATCCATTT
* * * * *
3672 TTTACGAGCAATTTTCCAAACATTCCATGCTCGAGAAATTGCATCTTTTGGTCTAAATAGTTTGT
1 CTT-CGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * ** *
3737 CATTTTGAAAACCAAGTTTTGGTCTTCAAACTAAAAACTTATTTACGTGAGAATTGTTTCTC-CT
65 CATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-
* * * * *
3801 TTGGTTCTTAGATGAACTTTTGAACTGGTCAAGCTTTTTACGAGTTCTTTTATAACTTTGGTTCC
128 TTGGTTCTTAGACGAACTTCTGAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTTCGGTTCC
*
3866 TTAAAGTATTCAAGACGATCCATTC
192 TTAAAGTATTCAAGACGATCCATTT
* * * * * * *
3891 CTTCGATCAATATTCCGAACATT-CGTGCTCGGGAAATCGAATCATTCGGTCTAAATAGTTTGTC
1 CTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* * * * *
3955 ATTTTGGAAACAACTTTTTGGTCCTTGAATTAAAAA-TATATTTATGTGAGAATTATTTCTCTTT
66 ATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCT
** * *
4019 TCATTCTTAGACAAACTTCTGAACTTGTCAAGCTTTTAC
129 TGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTAC
4058 TATTTCTCCT
Statistics
Matches: 3140, Mismatches: 582, Indels: 232
0.79 0.15 0.06
Matches are distributed among these distances:
199 4 0.00
200 160 0.05
201 3 0.00
214 11 0.00
215 488 0.16
216 1345 0.43
217 322 0.10
218 407 0.13
219 68 0.02
220 11 0.00
221 286 0.09
222 33 0.01
223 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
CTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC
ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
GTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
AGTATTCAAGACGATCCATTT
Found at i:1273 original size:431 final size:429
Alignment explanation
Indices: 743--4057 Score: 3219
Period size: 431 Copynumber: 7.6 Consensus size: 429
733 TTGGTCTTTG
* * * * * *
743 ACGTGGGATTTGTTTCTCTCTTGGTTCTTAAATGAACTTCTGAACTTTTCAAGCTTTTACGAGTT
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTT
* * *
808 CTTTTATGACATT-GGTTCCTTAAAGTATTCAAGGCGATCCATTCTTTCAAGCAATATTCCAAAC
66 CTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATATTCCAAAC
*
872 ATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATATTTTGTCATTTTGTAAACAACTTTTGG
130 ATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* * * *
937 TCTTTGAATTAAAACTTATTTACGCGAGAATTGTTTCTCTCTTAGATCTTGGATGAACTTCTGAA
195 TCTTTGAATTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA
* * * * * *
1002 TTTGTGAAACTTTTACGAGTCCTTTTACAACTTAGGTTCCTTAAAGCATTCTATGCGATCCATTC
260 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCTAAGCGATCCATTC
** * *
1067 CTTCTACAAATTGTTCGAACATTGAATGTTCGGTAAATCGCATCATTTGATCTAAATAGTTTGTC
325 CTTCTACAAATT-TTCGAACATTCCATGCTCGG-AAATCGCATCATTTGGTCTAAATAGTTTGTC
* *
1132 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTAATTG
388 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * * * *
1174 ACGTGGGATTTGTTTCTCTCTTGGTTCTTAAATGAACTTCTGAAGTTTTCAAGCTTTTACGAGTT
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTT
* * * * *
1239 CTTTTATGACATT-GGTTCCTCAAAGTATTCAAGGCGATCCATTCTTTCAATCAATATTCCAAAC
66 CTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATATTCCAAAC
*
1303 ATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATATTTTGTCATTTTGTAAACAACTTTTGG
130 ATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* *
1368 TCTTTGAATTAAAAACTTATTTACGCGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGA
195 TCTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
* * *
1433 ACTTTTCAAACATTTACGAGTTCTTTTATGACATT-GGTTCCTTAAAGTATT-TAAGGCGATCCA
259 ACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTAGGTTCCTTAAAGTATTCTAA-GCGATCCA
* * * * * * *
1496 TTCTTTCAACAAATATTCTAAACATTCCATGCTCGAGAAATCGCATCATTCGGCCTAAATATTTT
322 TTCCTTCTACAAATTTTC-GAACATTCCATGCTCG-GAAATCGCATCATTTGGTCTAAATAGTTT
1561 GTCA-TTTGTAAACAACTTTTGGT-TTTGGAATTAAAAACTTATTT
385 GTCATTTTGTAAACAACTTTTGGTCTTT-GAATTAAAAACTTATTT
* * * * *
1605 ACGTGAGAATTGTTTCTCTCTTAGATCCTGGATGAACATT-TGAACTTGTCAAACTTTTACGAGT
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAAC-TTCTGAACTTGTCAAACTTTTACGAGT
* * * * * * ** * * *
1669 CCTTTTACAACTTAGGTTCCATAAAGCATTCTATG-CGATCCATTCCCTCTA-CAA-ATTGTTCG
65 TCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGACGATCCATTCTTTCGAGCAATA-T-TCCA
** * * **
1731 AACATTGAATGTTCG-GTAAATCGCATCATTTGACCTAAATAGTTTGTCATTTTGTAAACAACTT
127 AACATTCCATGCTCGAG-AAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * *
1795 TTGGTCTTTGAATTAAAAACTTATTGACGTGGGATTTGTTTCTCTCTTGGTTCTTCGACGAAAC-
191 TTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AACT
* * * * * * *
1859 TCCGGACTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCA-GTTCCTTGAAGTGTATTATATAT
254 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-AGGTTCCTT-AA-AGTATTCTA-AG
** * * * * * ** *
1923 AAAT-GATCCTCTTC-ATCGAGCAATTTTTGAACATTCCATTCTCCGAAAATCAAATCTTTTGGT
315 CGATCCATTC-CTTCTA-C-A--AATTTTCGAACATTCCATGCT-CGGAAATCGCATCATTTGGT
* * * *
1986 TTAAATAGTTTGTCATTTTGTAAATAACTTTTGGACTTTGAATTAAGAACTTATTT
374 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * * * * * * * **
2042 ATGTGAAAATTGTCTCTCTATTGGTTTTTGGACGAACTACCGAACTTGTAAAACTTTTAATAGTT
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTT
* * * *
2107 ATTTTATAACTTCGGTTCCTTAAAGTATTCAAGACCATCCATT-TCTACGAGCAATTTTCCAAAC
66 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCT-TTCGAGCAATATTCCAAAC
* * * * * *
2171 ATTCCATGCTCGAGAAATTGCATCTTTTGGTCTAAGTAGTTTGTCATTTTGAAAACCAAGTTTTG
130 ATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTG
** ** *
2236 GTCTTCAAACAAAAAACTTATTTACGTGAGAATTGTTTCTC-CTTTGGTTCTTAGACGAACTTCT
194 GTCTTTGAA-TTAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTCT
* * * *
2300 GAACTAGTCAAGCTTTTTACGAGTTCTTTTATAACTTTGGTCCCTTAAAGTATTC-AAGACGATC
257 GAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCTAAG-CGATC
* * ** *
2364 CATTCCTTCGATC-AATATTCCGAACATTCTGTGCTCGGGAAATCGCATCATTCGGTCTAAATAG
320 CATTCCTTCTA-CAAAT-TTTCGAACATTCCATGCTC-GGAAATCGCATCATTTGGTCTAAATAG
* *
2428 TTTGTCATTTTGGAAACAACTTTTTGGTCCTTGAATTAAAAA-TATATTT
382 TTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACT-TATTT
* * * ** * * * *
2477 ATGTGAGAATTTTTTCTCTTTTCATTCTTAGACAAACTTCTGAACTTGTCAAGCTTTTACTATTT
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTT
* * * * * * * **
2542 CTCCTAATAACTTCGGTTGCTTAAACTATTCAAGATGATCCAATCCTTCGAGCAATATTCTGAAC
66 CT-TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATATTCCAAAC
* * * * * * *
2607 ATTCAATGCTCGGGAAATCGCATCATTCGGTCAAAATAGTTTG-CCTTTTCTTAAAAAAACTGTT
130 ATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTT-GT-AAACAACTTTT
** * * * *
2671 GGTCACTGAATTAAATACTTATTTATGTGTA-AATTGTTTATGTCTTGGTTCATGGACGAACTT-
193 GGTCTTTGAATTAAA-ACTTATTTACGTG-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * * * * *
2734 TCGAACTAG-GAAAATTTTACTATTTCTGTTATAACTTCA-GTTCCATAAAGTATTC-AAGATGA
256 T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCTAAG-CGA
* ** * * * *
2796 TCCGTTTGTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCACTTGGTCTAAATA
318 TCCATTCCTTCTA-CAAATTTTCGAACATTCCATGCTCG-GAAATCGCATCATTTGGTCTAAATA
2861 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
381 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* *
2910 ACGCGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTTTCAAACTTTTACGAGTT
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTT
* * * * *
2975 CTTTTATGACATT-GGTTCCTTAAAGTATTTAAGGCGATCCATTCTTTC-AACAAATATTCTAAA
66 CTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGC-AATATTCCAAA
* * *
3038 CATTCCATGCTCGAGAAATCGGATCATTCGGCCTAAATATTTTGTCATTTTGTAAACAACTTTTG
129 CATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * * * * *
3103 GTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCCTAGATCCTGGATGAACTTCTG
194 GTCTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG
* * * * *
3168 AACTTGTCAAACTTTTACGAGTCCTTTTACAACTTAGGTTCCTCAAAGCATTCTATGCGATCCAT
258 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCTAAGCGATCCAT
* * * *
3233 TCCTTCTACAAATTTTTCGAACATTCAACGTTCGGAAAATCGCATCATTTGATCTAAATAGTTTG
323 TCCTTCTACAAA-TTTTCGAACATTCCATGCTCGG-AAATCGCATCATTTGGTCTAAATAGTTTG
* * *
3298 TCATTTTGTGAACAACTTTTGGTCTTCGAATTAAAAACTTATTG
386 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
** * * * * * *
3342 ACGTGAGGTTTGTTTCTTTCTTGGTTCTTGGACGAACCTCCGGACTTGTCAAACTTTTACAAGTT
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTT
* * * * * * *
3407 CTTTTAAAACTTCTGTTCCTTGAAGTGTATTATATATAAATGATCCACTTC-ATCGAGCAAT-TT
66 CTTTTATAACTTCGGTTCCTT-AA-AGTA-T-T-CA-AGACGATCCA-TTCTTTCGAGCAATATT
* * * ** * * * *
3470 TCGAACATTCCATTCTCCGA-AAATCAAATCTTTTGGTTTAAATAGTTTGTCATTTTGTAAATAA
124 CCAAACATTCCATGCT-CGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * * *
3534 CTTTTGGTCTTTGAATTAAGAATTTATTTATGTGAAAATTGTCTCTCTCTTCGTTTTTGGACAAA
188 CTTTTGGTCTTTGAATTAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * * *
3599 CTACCGAACTTGTAAAACTTTTACGAGTTATTTTATAACTTCGGTTCCTTAAAGTATTC-AAGAC
252 CTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCTAAG-C
* * * * * *
3663 CATCCGTT--TTTTACGAGCAATTTTCCAAACATTCCATGCTCGAGAAATTGCATCTTTTGGTCT
316 GATCCATTCCTTCTAC-A--AATTTT-CGAACATTCCATGCTCG-GAAATCGCATCATTTGGTCT
* * ** *
3726 AAATAGTTTGTCATTTTGAAAACCAAGTTTTGGTCTTCAAACTAAAAACTTATTT
376 AAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * *
3781 ACGTGAGAATTGTTTCTC-CTTTGGTTCTTAGATGAACTTTTGAACTGGTCAAGCTTTTTACGAG
1 ACGTGAGAATTGTTTCTCTC-TTGGTTCTTAGACGAACTTCTGAACTTGTCAAAC-TTTTACGAG
* * * *
3845 TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAATATTCCGAA
64 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATATTCCAAA
* * * *
3910 CATT-CGTGCTCGGGAAATCGAATCATTCGGTCTAAATAGTTTGTCATTTTGGAAACAACTTTTT
129 CATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTT
* * * * * ** * *
3974 GGTCCTTGAATTAAAAATATATTTATGTGAGAATTATTTCTCTTTTCATTCTTAGACAAACTTCT
193 GGTCTTTGAATTAAAACT-TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT
*
4039 GAACTTGTCAAGCTTTTAC
257 GAACTTGTCAAACTTTTAC
4058 TATTTCTCCT
Statistics
Matches: 2365, Mismatches: 425, Indels: 184
0.80 0.14 0.06
Matches are distributed among these distances:
429 1 0.00
430 13 0.01
431 547 0.23
432 445 0.19
433 114 0.05
434 236 0.10
435 178 0.08
436 195 0.08
437 358 0.15
438 146 0.06
439 104 0.04
440 28 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (429 bp):
ACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTT
CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATATTCCAAACA
TTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
CTTTGAATTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAC
TTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCTAAGCGATCCATTCC
TTCTACAAATTTTCGAACATTCCATGCTCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
Found at i:1641 original size:647 final size:646
Alignment explanation
Indices: 2--4057 Score: 3925
Period size: 647 Copynumber: 6.3 Consensus size: 646
1 A
* * * * * *
2 TCCTTCGAGCAATATTCTGAACATTCAATGCTCGGGAAATCACATCATTAGGTCAAAATAGTTTG
1 TCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTG
* ** * * ** * *
67 CCATTTCTAAAAAAAACTGTTGGTCACTGAATTAAATACTTA-TTATGTGTA-AATTGTTTATCT
66 TCATTT-TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAATTGTTTCTCT
* ** ** * * * *
130 CTTGGTTCTTGGACGAACTT-TCGAACAAGAAAAACTTTTACTATTTCTGTTATAACTTCAGTTC
129 CTTGGTTCTTAGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * * *
194 CATAAAGTATTCAAGATGATCCGTT-TGTTCGAGCAATTTTTCGAACATTCAATGCTCGAGAAAT
193 CTTAAAGTATTCAAGACGATCCATTCT-TTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAAT
* *
258 CGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
257 CGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * * *
323 ATTTACGCGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTTTCAAACATTTACG
322 ATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACG
* * * *
388 AGTTCTTTTATGACATT-GGTTCCTTAAAGTATT-TAAGGCGATCCATTCTTTCAACAAATATTC
387 AGTTCTTTTATAAC-TTAGGTTCCTTAAAGTATTCTAA-GCGATCCATTCCTTCTACAAATTTTC
* * * * *
451 TAAACATTCCATGCTCGAGAAATCGCATCATTCGGCCTAAATATTTTGTCATTTTGTAAACAACT
450 -GAACATTCAATGCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * *
516 TTTGGTCTTTGAATTAAAAACTTATTTATGTGGGAATTGTTTCTCTCTTAGATCTTGGATGAACT
513 TTTGGTCTTTGAATTAAAAACTTATTTACGTGGGATTTGTTTCTCTCTTGGTTCTTAGATGAACT
* * * * * * * *
581 TCTGAACTTGTCAAACTTTTACGAGTCCATTTACAACTTAGGTTCCTTAAAGCATTCTATG-CGA
578 TCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCTCAAAGTATTC-AAGACGA
645 TCCAT
642 TCCAT
* ** * ** ** * ***
650 TCCTTCTAAAAATTTTTTGAACATTGAATGTTCG-GTAAATCGCATCATTTAATCTAAATAGTTT
1 TCCTTCGAGCAATATTCCGAACATTCCATGCTCGAG-AAATCGCATCATTCGGTCTAAATAGTTT
* *
714 GTCATTTTGTAAACAACTTTTGGTCTTTG--------AC--------GTGGGATTTGTTTCTCTC
65 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTC
* * * * *
763 TTGGTTCTTAAATGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATGACATT-GGTTCC
130 TTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCC
* * *
827 TTAAAGTATTCAAGGCGATCCATTCTTTCAAGCAATATTCCAAACATTCCATGCTCGAGAAATCG
194 TTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATCG
*
892 CATCATTCGGTCTAAATATTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAACTTAT
259 CATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * *
956 TTACGCGAGAATTGTTTCTCTCTTAGATCTTGGATGAACTTCTGAATTTGTGAAACTTTTACGAG
324 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAG
* * * *
1021 TCCTTTTACAACTTAGGTTCCTTAAAGCATTCTATGCGATCCATTCCTTCTACAAATTGTTCGAA
389 TTCTTTTATAACTTAGGTTCCTTAAAGTATTCTAAGCGATCCATTCCTTCTACAAATT-TTCGAA
* * *
1086 CATTGAATGTTCGGTAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
453 CATTCAATGCTCGG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * *
1151 GTCTTTGAATTAAAAACTAATTGACGTGGGATTTGTTTCTCTCTTGGTTCTTAAATGAACTTCTG
517 GTCTTTGAATTAAAAACTTATTTACGTGGGATTTGTTTCTCTCTTGGTTCTTAGATGAACTTCTG
* * * *
1216 AAGTTTTCAAGCTTTTACGAGTTCTTTTATGACATT-GGTTCCTCAAAGTATTCAAGGCGATCCA
582 AACTTGTCAAGCTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTCAAAGTATTCAAGACGATCCA
1280 T
646 T
* * * * *
1281 TCTTTCAATCAATATTCCAAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATATTTTG
1 TCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTG
* *
1346 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGCGAGAATTGTTTCTCTCT
66 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCT
* * *
1411 TGGTTCTTAGACGAACTTCTGAACTTTTCAAACATTTACGAGTTCTTTTATGACATT-GGTTCCT
131 TGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCT
* * * * *
1475 TAAAGTATTTAAGGCGATCCATTCTTTC-AACAAATATTCTAAACATTCCATGCTCGAGAAATCG
195 TAAAGTATTCAAGACGATCCATTCTTTCGAGC-AATTTTCCAAACATTCCATGCTCGAGAAATCG
* *
1539 CATCATTCGGCCTAAATATTTTGTCA-TTTGTAAACAACTTTTGGT-TTTGGAATTAAAAACTTA
259 CATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT-GAATTAAAAACTTA
* * *
1602 TTTACGTGAGAATTGTTTCTCTCTTAGATCCTGGATGAACATT-TGAACTTGTCAAACTTTTACG
323 TTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAAC-TTCTGAACTTGTCAAACTTTTACG
* * * * * *
1666 AGTCCTTTTACAACTTAGGTTCCATAAAGCATTCTATGCGATCCATTCCCTCTACAAATTGTTCG
387 AGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCTAAGCGATCCATTCCTTCTACAAATT-TTCG
* * **
1731 AACATTGAATGTTCGGTAAATCGCATCATTTGACCTAAATAGTTTGTCATTTTGTAAACAACTTT
451 AACATTCAATGCTCGG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * *
1796 TGGTCTTTGAATTAAAAACTTATTGACGTGGGATTTGTTTCTCTCTTGGTTCTTCGACGAAAC-T
515 TGGTCTTTGAATTAAAAACTTATTTACGTGGGATTTGTTTCTCTCTTGGTTCTTAGATG-AACTT
* * * * * * * * * *
1860 CCGGACTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCAGTTCCTTGAAGTGTATTATATATAA
579 CTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCC-TCAA-AGTA-T-T-CA-AG
*
1925 ATGATCC-T
638 ACGATCCAT
* * ** * ** * * *
1933 CTTCATCGAGCAAT-TTTTGAACATTCCATTCTCCGA-AAATCAAATCTTTTGGTTTAAATAGTT
1 -TCCTTCGAGCAATATTCCGAACATTCCATGCT-CGAGAAATCGCATCATTCGGTCTAAATAGTT
* * * * *
1996 TGTCATTTTGTAAATAACTTTTGGACTTTGAATTAAGAACTTATTTATGTGAAAATTGTCTCTCT
64 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCT
* * * * * * ** *
2061 ATTGGTTTTTGGACGAACTACCGAACTTGTAAAACTTTTAATAGTTATTTTATAACTTCGGTTCC
129 CTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * *
2126 TTAAAGTATTCAAGACCATCCATT-TCTACGAGCAATTTTCCAAACATTCCATGCTCGAGAAATT
194 TTAAAGTATTCAAGACGATCCATTCT-TTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATC
* * * * * ** **
2190 GCATCTTTTGGTCTAAGTAGTTTGTCATTTTGAAAACCAAGTTTTGGTCTTCAAACAAAAAACTT
258 GCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTT
* * * *
2255 ATTTACGTGAGAATTGTTTCTC-CTTTGGTTCTTAGACGAACTTCTGAACTAGTCAAGCTTTTTA
322 ATTTACGTGAGAATTGTTTCTCTC-TTAGTTCTTGGACGAACTTCTGAACTTGTCAAAC-TTTTA
* * *
2319 CGAGTTCTTTTATAACTTTGGTCCCTTAAAGTATTC-AAGACGATCCATTCCTTCGATC-AATAT
385 CGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCTAAG-CGATCCATTCCTTCTA-CAAAT-T
* ** * *
2382 TCCGAACATTCTGTGCTCGGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGGAAACAA
447 TTCGAACATTCAATGCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * ** *
2447 CTTTTTGGTCCTTGAATTAAAAA-TATATTTATGTGAGAATTT-TTTCTCTTTTCATTCTTAGAC
511 C-TTTTGGTCTTTGAATTAAAAACT-TATTTACGTG-GGATTTGTTTCTCTCTTGGTTCTTAGAT
* * * * * * * *
2510 AAACTTCTGAACTTGTCAAGCTTTTACTATTTCTCCTAATAACTTCGGTTGCTTAAACTATTCAA
573 GAACTTCTGAACTTGTCAAGCTTTTACGAGTTCT-TTTATAACTTCGGTTCCTCAAAGTATTCAA
* *
2575 GATGATCCAA
637 GACGATCCAT
* * * *
2585 TCCTTCGAGCAATATTCTGAACATTCAATGCTCGGGAAATCGCATCATTCGGTCAAAATAGTTTG
1 TCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTG
* * * * ** * * *
2650 -CCTTTTCTTAAAAAAACTGTTGGTCACTGAATTAAATACTTATTTATGTGTA-AATTGTTTATG
66 TCATTTT-GT-AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAATTGTTTCTC
* * * * * * * * *
2713 TCTTGGTTCATGGACGAACTT-TCGAACTAG-GAAAATTTTACTATTTCTGTTATAACTTCAGTT
128 TCTTGGTTCTTAGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * ***
2776 CCATAAAGTATTCAAGATGATCCGTT-TGTTCGAGCAATTTTTTGAACATTCCATGCTCGAGAAA
192 CCTTAAAGTATTCAAGACGATCCATTCT-TTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAA
2840 TCGCATCACTT-GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
256 TCGCATCA-TTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * *
2904 TTATTTACGCGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTTTCAAACTTTTA
320 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * *
2969 CGAGTTCTTTTATGACATT-GGTTCCTTAAAGTATT-TAAGGCGATCCATTCTTTCAACAAATAT
385 CGAGTTCTTTTATAAC-TTAGGTTCCTTAAAGTATTCTAA-GCGATCCATTCCTTCTACAAATTT
* * * * * *
3032 TCTAAACATTCCATGCTCGAGAAATCGGATCATTCGGCCTAAATATTTTGTCATTTTGTAAACAA
448 TC-GAACATTCAATGCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * * * *
3097 CTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCCTAGATCCTGGATGAA
511 CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGGGATTTGTTTCTCTCTTGGTTCTTAGATGAA
* * * * * *
3162 CTTCTGAACTTGTCAAACTTTTACGAGTCCTTTTACAACTTAGGTTCCTCAAAGCATTCTATG-C
576 CTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCTCAAAGTATTC-AAGAC
3226 GATCCAT
640 GATCCAT
* * * * * * * *
3233 TCCTTCTA-CAAATTTTTCGAACATTCAACGTTCG-GAAAATCGCATCATTTGATCTAAATAGTT
1 TCCTTCGAGC-AATATTCCGAACATTCCATGCTCGAG-AAATCGCATCATTCGGTCTAAATAGTT
* * * * ** *
3296 TGTCATTTTGTGAACAACTTTTGGTCTTCGAATTAAAAACTTATTGACGTGAGGTTTGTTTCTTT
64 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCT
* * * * * * *
3361 CTTGGTTCTTGGACGAACCTCCGGACTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCTGTTCC
129 CTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * * * *
3426 TTGAAGTGTATTATATATAAATGATCCACTTC-ATCGAGCAATTTT-CGAACATTCCATTCTCCG
194 TT-AA-AGTA-T-T-CA-AGACGATCCA-TTCTTTCGAGCAATTTTCCAAACATTCCATGCT-CG
** * * * *
3489 A-AAATCAAATCTTTTGGTTTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAA
251 AGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
* * * * * * * * * * *
3553 GAATTTATTTATGTGAAAATTGTCTCTCTCTTCGTTTTTGGACAAACTACCGAACTTGTAAAACT
316 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTGAACTTGTCAAACT
* * * * *
3618 TTTACGAGTTATTTTATAACTTCGGTTCCTTAAAGTATTC-AAGACCATCCGTT--TTTTACGAG
381 TTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCTAAG-CGATCCATTCCTTCTAC-A-
* * * * *
3680 CAATTTTCCAAACATTCCATGCTCGAGAAATTGCATCTTTTGGTCTAAATAGTTTGTCATTTTGA
443 -AATTTT-CGAACATTCAATGCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* ** * * *
3745 AAACCAAGTTTTGGTCTTCAAACTAAAAACTTATTTACGTGAGAATTGTTTCTC-CTTTGGTTCT
505 AAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGGGATTTGTTTCTCTC-TTGGTTCT
* * * *
3809 TAGATGAACTTTTGAACTGGTCAAGCTTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTA
568 TAGATGAACTTCTGAACTTGTCAAGC-TTTTACGAGTTCTTTTATAACTTCGGTTCCTCAAAGTA
3874 TTCAAGACGATCCAT
632 TTCAAGACGATCCAT
* * * *
3889 TCCTTCGATCAATATTCCGAACATT-CGTGCTCGGGAAATCGAATCATTCGGTCTAAATAGTTTG
1 TCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTG
* * *
3953 TCATTTTGGAAACAACTTTTTGGTCCTTGAATTAAAAA-TATATTTATGTGAGAATTATTTCTCT
66 TCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACT-TATTTATGTGAGAATTGTTTCTCT
* ** * *
4017 TTTCATTCTTAGACAAACTTCTGAACTTGTCAAGCTTTTAC
129 CTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTAC
4058 TATTTCTCCT
Statistics
Matches: 2829, Mismatches: 470, Indels: 210
0.81 0.13 0.06
Matches are distributed among these distances:
630 5 0.00
631 350 0.12
632 173 0.06
633 4 0.00
639 4 0.00
645 3 0.00
646 29 0.01
647 521 0.18
648 175 0.06
649 88 0.03
650 113 0.04
651 113 0.04
652 378 0.13
653 259 0.09
654 151 0.05
655 235 0.08
656 210 0.07
657 18 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (646 bp):
TCCTTCGAGCAATATTCCGAACATTCCATGCTCGAGAAATCGCATCATTCGGTCTAAATAGTTTG
TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCT
TGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
AAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATCGCA
TCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
ACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTT
CTTTTATAACTTAGGTTCCTTAAAGTATTCTAAGCGATCCATTCCTTCTACAAATTTTCGAACAT
TCAATGCTCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCT
TTGAATTAAAAACTTATTTACGTGGGATTTGTTTCTCTCTTGGTTCTTAGATGAACTTCTGAACT
TGTCAAGCTTTTACGAGTTCTTTTATAACTTCGGTTCCTCAAAGTATTCAAGACGATCCAT
Done.