genome.fa.s9656.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009656.1 Kokia drynarioides strain JFW-HI SEQ_124374, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93180

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10328--10452	62	2.0	63	85	4	173	44	5	12	36	1.66
10440--10993	274	2.0	276	90	0	860	41	7	5	46	1.53
10756--10968	67	3.1	67	64	19	159	42	5	5	46	1.51
10440--10993	138	4.0	138	90	0	860	41	7	5	46	1.53
27294--27352	28	2.1	28	93	6	102	32	13	16	37	1.88
33702--33740	19	2.1	19	100	0	78	33	20	0	46	1.51
35835--35886	24	2.2	24	83	6	63	57	3	0	38	1.17
37334--37395	30	2.1	30	93	0	106	41	20	3	33	1.69
38674--38715	19	2.2	19	83	8	50	28	7	2	61	1.35
40807--40910	31	3.6	29	71	15	81	42	0	2	53	1.22
40809--40904	30	3.2	30	81	8	117	40	1	3	55	1.23
40936--41001	29	2.2	30	94	2	116	51	3	0	45	1.16
47168--47256	4	22.2	4	90	0	142	49	25	2	22	1.61
49414--49439	6	4.3	6	100	0	52	50	0	0	50	1.00
52899--52947	17	2.9	16	73	8	53	55	0	0	44	0.99
52899--52950	16	3.2	16	78	5	59	55	0	0	44	0.99
56642--56831	45	4.2	45	78	6	188	37	11	20	31	1.88
56642--56807	90	1.8	90	87	7	248	36	12	19	31	1.90
56642--56831	90	2.1	89	83	7	233	37	11	20	31	1.88
71960--72132	30	5.9	28	76	14	163	34	32	2	29	1.72
71965--72153	59	3.2	59	90	3	292	36	31	3	28	1.75
71968--72153	29	6.3	29	77	14	170	36	31	3	28	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71968--72153	30	6.3	29	75	12	157	36	31	3	28	1.75
74060--74091	12	2.7	12	100	0	64	0	43	9	46	1.35
77394--77497	49	2.1	49	92	0	181	34	14	15	35	1.88
87219--87283	19	3.4	19	85	12	96	38	0	4	56	1.20
87215--87284	20	3.5	20	86	11	99	37	0	5	57	1.23
88437--88502	31	2.1	31	88	0	96	39	10	6	43	1.64

Tables:   1

The End!