Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009659.1 Kokia drynarioides strain JFW-HI SEQ_124377, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15112
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30


Found at i:558 original size:17 final size:18

Alignment explanation


    Indices: 536--571  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        526 TAAATGAGTT

                              
        536 AATTAGGAT-TAAATTGG
          1 AATTAGGATATAAATTGG

                   *          
        553 AATTAGGGTATAAATTGG
          1 AATTAGGATATAAATTGG

             
        571 A
          1 A

        572 TAGAAATTCA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17    8  0.47
  18    9  0.53

ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33


Consensus pattern (18 bp):   
AATTAGGATATAAATTGG

Found at i:891 original size:18 final size:18

Alignment explanation


    Indices: 868--904  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        858 TTTGTGATCA

                              
        868 AAATTGAAAGTGAAAGTG
          1 AAATTGAAAGTGAAAGTG

                  *  *        
        886 AAATTGGAATTGAAAGTG
          1 AAATTGAAAGTGAAAGTG

             
        904 A
          1 A

        905 TATGAATTGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.49, C:0.00, G:0.27, T:0.24


Consensus pattern (18 bp):   
AAATTGAAAGTGAAAGTG
Done.