Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009662.1 Kokia drynarioides strain JFW-HI SEQ_124380, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 763

Length: 1272
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31


Found at i:1160 original size:45 final size:44

Alignment explanation


    Indices: 1046--1215  Score: 207
    Period size: 45  Copynumber: 3.8  Consensus size: 44

       1036 GTATCGCGAA

                          *  *        *  **  *   *       
       1046 TGGCTCGTCAAACTCAGCCTGATATCTTTCCCTAGAGTATTGCGG
          1 TGGCTCGTCAAA-TGAGGCTGATATCCTTGGCTTGAGCATTGCGG

                                                         
       1091 TGG-TCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTGCGG
          1 TGGCTCGTCAAA-TGAGGCTGATATCCTTGGCTTGAGCATTGCGG

                                *               *        
       1135 TGGCTCGTCAAATAGAGGCTAATATCCTTGGCTTGATCATTGCGG
          1 TGGCTCGTCAAAT-GAGGCTGATATCCTTGGCTTGAGCATTGCGG

                    *                           
       1180 TGGCTCGTTAAACTGAGGCTGATATCCTTGGCTTGA
          1 TGGCTCGTCAAA-TGAGGCTGATATCCTTGGCTTGA

       1216 TGAGTTATGC


Statistics
Matches: 110,  Mismatches: 12, Indels: 6
        0.86            0.09        0.05

Matches are distributed among these distances:
  44   37  0.34
  45   72  0.65
  46    1  0.01

ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32


Consensus pattern (44 bp):   
TGGCTCGTCAAATGAGGCTGATATCCTTGGCTTGAGCATTGCGG

Done.