Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009663.1 Kokia drynarioides strain JFW-HI SEQ_124381, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3254
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35


Found at i:1343 original size:53 final size:51

Alignment explanation


    Indices: 1263--1362  Score: 182
    Period size: 53  Copynumber: 1.9  Consensus size: 51

       1253 AGACTCCTAA

                                                                 
       1263 TAATAAACCAAAATCGCCTATCCGATTAGTTACAAACACTTTTTGACAAGCAT
          1 TAATAAACCAAAATCGCCTATCCGATTAGTTAC--ACACTTTTTGACAAGCAT

                                                           
       1316 TAATAAACCAAAATCGCCTATCCGATTAGTTACACACTTTTTGACAA
          1 TAATAAACCAAAATCGCCTATCCGATTAGTTACACACTTTTTGACAA

       1363 TCGTTCGCCG


Statistics
Matches: 47,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
  51   14  0.30
  53   33  0.70

ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29


Consensus pattern (51 bp):   
TAATAAACCAAAATCGCCTATCCGATTAGTTACACACTTTTTGACAAGCAT

Found at i:2635 original size:22 final size:22

Alignment explanation


    Indices: 2608--2666  Score: 82
    Period size: 26  Copynumber: 2.5  Consensus size: 22

       2598 GTTTTACACT

                                  
       2608 TTTGTTTGTTCCCTTCCATCTC
          1 TTTGTTTGTTCCCTTCCATCTC

                                      
       2630 TTTGTTTTCATGTTCCCTTCCATCTC
          1 TTTG--TT--TGTTCCCTTCCATCTC

                       
       2656 TTTGTTTGTTC
          1 TTTGTTTGTTC

       2667 TTGTGCCACT


Statistics
Matches: 33,  Mismatches: 0, Indels: 8
        0.80            0.00        0.20

Matches are distributed among these distances:
  22    9  0.27
  24    4  0.12
  26   20  0.61

ACGTcount: A:0.05, C:0.27, G:0.10, T:0.58


Consensus pattern (22 bp):   
TTTGTTTGTTCCCTTCCATCTC
Done.