Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009667.1 Kokia drynarioides strain JFW-HI SEQ_124385, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2774
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26


Found at i:413 original size:91 final size:86

Alignment explanation


    Indices: 253--475  Score: 275
    Period size: 91  Copynumber: 2.5  Consensus size: 86

        243 GTCCGATGCT

                                            *                     *          
        253 TCCCGATGGTCCCGCACCACCATCGGCCTAAGTTGCCGATGGTGTCCGATGCTCTCGCACATCCA
          1 TCCCGATGGTCCCGCACCACCATCGGCCTAAGCTGCCGATGGTGTCCGATGCTCCCGCACATCCA

                               * 
        318 AGGCACCAAGGTCCCGAGGGC
         66 AGGCACCAAGGTCCCGAGGAC

                         *   *                                 *             
        339 TCCCGATGGTCCCACACTACCATCGGCCTAAGCTGCCAATATGATGGTGTCTGATGCTCCCGCAC
          1 TCCCGATGGTCCCGCACCACCATCGGCCTAAGCTGCC-----GATGGTGTCCGATGCTCCCGCAC

                *            *    *  *
        404 ATCCGAGGCACCAAGGTGCCGATGAT
         61 ATCCAAGGCACCAAGGTCCCGAGGAC

             **      *                         *          
        430 TGTCGATGGCCCCGCACCACCATCGGCCTAAGCTGTCGATGGTGTC
          1 TCCCGATGGTCCCGCACCACCATCGGCCTAAGCTGCCGATGGTGTC

        476 TGATTGTGTC


Statistics
Matches: 116,  Mismatches: 16, Indels: 10
        0.82            0.11        0.07

Matches are distributed among these distances:
  86   43  0.37
  91   73  0.63

ACGTcount: A:0.19, C:0.35, G:0.26, T:0.20


Consensus pattern (86 bp):   
TCCCGATGGTCCCGCACCACCATCGGCCTAAGCTGCCGATGGTGTCCGATGCTCCCGCACATCCA
AGGCACCAAGGTCCCGAGGAC
Done.