Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009671.1 Kokia drynarioides strain JFW-HI SEQ_124389, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2240
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31


Found at i:649 original size:21 final size:21

Alignment explanation


    Indices: 623--696  Score: 94
    Period size: 21  Copynumber: 3.5  Consensus size: 21

        613 GGAGTTTTTG

                        *  **    
        623 GTATCGGTAGAAGTAAGACTT
          1 GTATCGGTAGAACTATCACTT

                          *      
        644 GTATCGGTAGAACTGTCACTT
          1 GTATCGGTAGAACTATCACTT

                            *    
        665 GTATCGGTAGAACTATTACTT
          1 GTATCGGTAGAACTATCACTT

                 *     
        686 GTATCAGTAGA
          1 GTATCGGTAGA

        697 GGTCTGCACT


Statistics
Matches: 46,  Mismatches: 7, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   46  1.00

ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32


Consensus pattern (21 bp):   
GTATCGGTAGAACTATCACTT

Found at i:892 original size:13 final size:13

Alignment explanation


    Indices: 860--884  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        850 AAATTATTTG

                         
        860 AATAAAAAATAAA
          1 AATAAAAAATAAA

                        
        873 AATAAAAAATAA
          1 AATAAAAAATAA

        885 TTATAAAATA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16


Consensus pattern (13 bp):   
AATAAAAAATAAA
Done.