genome.fa.s9675.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009675.1 Kokia drynarioides strain JFW-HI SEQ_124393, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  254440

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6974--7033	15	3.8	15	72	12	57	8	26	3	61	1.40
6972--7049	33	2.4	33	80	10	88	10	26	2	60	1.42
10740--10772	9	3.9	9	84	15	52	48	6	0	45	1.27
10732--10772	16	2.5	16	96	4	73	48	7	0	43	1.30
15081--15211	43	3.0	43	85	6	149	61	15	17	6	1.54
34263--34292	7	4.3	7	100	0	60	13	0	43	43	1.43
35817--35882	21	3.2	20	70	10	62	4	7	18	69	1.29
35885--35949	21	2.9	23	72	11	62	13	3	13	69	1.31
35873--35969	44	2.2	43	78	8	106	12	5	15	67	1.40
36096--36148	24	2.2	23	80	9	61	20	0	7	71	1.10
38459--38499	22	1.9	22	85	14	59	17	19	19	43	1.88
44084--44130	21	2.3	20	81	3	58	0	36	2	61	1.08
47603--47632	14	2.1	15	93	6	53	26	16	0	56	1.40
48478--48655	52	3.4	52	84	3	205	34	24	14	26	1.94
48516--48673	52	3.0	52	87	0	208	33	23	13	29	1.93
54596--54624	14	2.0	15	93	6	51	20	24	6	48	1.74
55503--55698	52	3.8	52	88	4	261	33	27	13	26	1.93
55503--55698	105	1.9	104	86	3	277	33	27	13	26	1.93
62538--62598	21	3.2	21	61	29	55	32	1	9	55	1.42
62538--62608	35	2.0	35	100	0	142	30	2	8	57	1.43
65059--65136	36	2.1	39	83	13	101	11	16	7	64	1.49
69217--69257	17	2.4	17	80	19	50	46	9	21	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75051--75087	17	2.1	19	85	10	51	64	8	13	13	1.48
89355--89408	22	2.5	22	100	0	108	18	27	31	22	1.97
89571--89603	16	2.0	17	88	5	50	18	3	9	69	1.28
104800--104873	29	2.6	29	77	12	80	44	4	1	50	1.29
104819--104860	17	2.3	19	80	8	52	40	7	2	50	1.43
108683--108756	29	2.5	30	78	10	82	45	4	1	48	1.29
110005--110084	35	2.3	34	85	6	99	27	23	16	32	1.96
111065--111096	3	10.7	3	100	0	64	68	0	31	0	0.90
116046--116070	6	4.2	6	100	0	50	68	0	0	32	0.90
117145--117284	20	7.1	20	75	10	101	37	21	18	22	1.94
117197--117254	13	4.4	13	78	8	55	39	20	17	22	1.92
117197--117262	13	5.0	13	80	7	53	37	22	18	21	1.94
117137--117261	60	2.1	60	86	3	171	38	19	19	23	1.93
117145--117266	40	3.0	40	76	7	131	38	20	18	22	1.93
117251--117291	18	2.3	18	95	0	73	36	29	17	17	1.92
123126--123156	6	5.2	6	92	0	53	64	3	0	32	1.09
123785--123820	19	1.9	19	94	5	65	36	19	5	38	1.75
124021--124073	21	2.6	20	81	3	70	30	24	16	28	1.97
129673--129755	29	2.8	30	78	14	91	43	4	1	50	1.31
136696--136801	48	2.2	48	81	3	117	23	16	20	39	1.92
143645--143742	37	2.6	38	86	1	144	18	16	38	26	1.91
151678--151725	25	1.9	25	83	8	62	37	8	33	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156158--156215	24	2.2	26	82	11	66	24	6	12	56	1.59
156407--156459	17	3.2	17	75	21	58	18	3	5	71	1.21
160715--160790	20	3.3	20	67	32	55	55	22	0	22	1.44
160693--160800	49	2.2	49	96	0	198	54	21	0	24	1.45
163145--164837	846	2.0	846	97	0	3233	38	15	19	26	1.92
168711--169021	36	8.7	36	78	4	173	36	19	15	28	1.93
168712--168978	72	3.7	72	83	4	299	36	19	15	28	1.92
168771--168982	71	3.0	72	86	4	286	35	18	15	29	1.92
174614--174888	53	5.2	53	86	3	365	25	13	24	37	1.91
174593--174888	106	2.8	106	86	3	416	25	13	23	37	1.91
176948--176977	14	2.2	14	94	5	53	36	10	23	30	1.87
181460--181500	14	3.1	14	83	16	52	73	0	7	19	1.07
187892--187931	20	2.1	19	85	4	53	62	7	12	17	1.52
199151--199230	35	2.3	35	77	14	85	32	15	28	23	1.95
213805--213886	27	3.1	27	63	16	73	24	13	26	35	1.92
213763--214154	51	7.5	52	87	6	501	27	14	22	35	1.94
214836--214892	21	2.7	21	81	5	53	29	14	21	35	1.92
216449--216548	36	2.8	36	81	0	101	23	23	16	38	1.93
223520--223649	36	3.6	36	83	1	154	36	24	15	23	1.94
225621--225654	11	3.0	11	86	4	50	11	8	0	79	0.94
232148--232222	37	2.0	37	89	0	114	44	30	6	18	1.76
233301--233362	9	6.7	9	76	20	65	58	20	1	19	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233301--233362	19	3.3	18	75	20	65	58	20	1	19	1.48
233301--233361	23	2.6	23	82	14	72	57	21	1	19	1.49
233706--233796	44	2.1	44	87	4	130	46	18	16	18	1.85
236471--236508	20	1.9	20	88	0	58	28	26	7	36	1.84
236481--236761	153	1.8	153	90	3	449	35	18	16	29	1.93
245071--245136	33	2.0	33	90	0	105	28	15	10	45	1.79
246205--246251	16	3.0	16	79	14	53	19	8	4	68	1.33
250553--250586	6	5.7	6	92	0	59	38	50	11	0	1.39
254103--254177	28	2.7	28	91	0	123	32	16	28	24	1.96

Tables:   1

The End!